BtaINT0038240 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020931 | CHN2
Description
CHN2 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q0VD41]
Coordinates
chr4:67065205-67072426:-
Coord C1 exon
chr4:67072321-67072426
Coord A exon
chr4:67065662-67072320
Coord C2 exon
chr4:67065205-67065661
Length
6659 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGC
5' ss Score
6.95
3' ss Seq
TGTGTATGTTTGTCTTGCAGGGT
3' ss Score
11.37
Exon sequences
Seq C1 exon
AAATCTCCAATGCGGATGAGAGGCTGGAAGCGGTCCATGAAGTGCTGATGCTGCTTCCTCCTGCCCACTATGAGACCCTCCGATACCTGATGATCCACCTCAAGAA
Seq A exon
GTAAGCTGACACCTCCTTGGCGCCGCCTCTGCACACTCTGTCTGCCCTGCACAGTTGATGCATTAGGAAAAGTGCACAACCTCCCCAACCCACTGAGTGAACAGATCCTCCTTTTAAGTGAATTAGGTTACCTTCTCCAGGTCAGCCCATTGATAACCCTAGACACTCACTCTGTGTCTAGGAGATAGCAGAAGCTGCTTCCCGCACTTTAGATGTGTCCTGTCTCTGAGGCTGGTACTGTTAGGAGCCTCACGTTACAGGTAATACTTCTGAAGCTTAGGGACATTACACAACTGATGCAGAGAGGTGAGGTAAAGCCAGGATGGAAACCCAGTTTGACCCATAGCCCCTAATCTGTTTTAACCATGTGTCTAGGCTGCCCCTGAGTCTGCACCCTCCTCCCACAAAGCCTTGAACTCTGTGTTCTGTCTCTCCTTTTGCTCACCCTAAACCCAAACTCCTGAGCTGCCTTCTTTCTGGGCAAGCAGATTTCCACCCTGACTTCTTGTTTCATCTGATGTATTAATTATCTGTCGTGTGTGTGTGCTCAGTCATGTCCAAATCTCTGCAACCCCATGGACAGCCCACCAGGCTCCTCTGTCCATAGGATTCTCCAGGCAAGAATACTGGAATGGGTTGTCATTTCCTCCCACTGACTGACAGATTGCTTGAAACTGTAAGTGTTTATTATTGCATAGTCTCTGTGGACAGGAATCCAGGTGGCTTTTGCTGGGTGCCTTTGGTTCAAGGTTAATAATGAGGCTGCAGTCAAACTGACAGCCAGGCTGCAAGGCTCGAGTAGGGAAGCGTCCACTTCCAAGCTCACTCACATGGTCTTTGGCAGGATTCAGTTCCTCAGAGGCGATTAGCCTGCAGGTGTCACTTGCCGACTGTTCTCAGAACAGGAGCCCTGTTTTCTGTCATATGGATCTTCCCATAGGCAGCTCCCCACATGGCAGCTGGCTTCTCTTACAGCAAGCAAGCAAGACACCCACGACGGAAGACAGCCTTTCTGTAACCTAATCTCAGAAGCCATACCCCACTGCTCTTGCTATTACTCTATGTGTTGGAAGCAAGTCACTAGGTCTAGCCTATGCTCTAGGGCAACAGTCACCAGCCTGTTTGGCACCAGGGACCAGTTTCGCTGAAGACAGTATTTCCATGGACCAGGGTTTGGGGGATGGTTTGGGGATGAGTCAAGCAGATTACATTTATTGTGTACTTTATTTCTATTGGTCTTCTCTGATAGCTCAATTGTTAAAGAATCTGCCTGCAATGCAGGAGAGCCCGGTTTGATTCCTGGGTCAGGAAGATCCACTGGAGAAGGGATATAGGCCACCAACTCCAGTATTCTTGGACTTCCCTTGTGGCTCAGCTGGTAAAAAATCCACCTACAATGCTGGAGACTTGGGTTCAATCCCTGGGTTGGGAAGATCCCCTGGAGAAGGGAAAGGCTACCCACTTCAGTATTCTGGCCTGGAGAATTCCAGGGACTGTATAGTCCATGGGGTCGCAAAAAGTCAGACACGACTGGGCAACTTTCACTTATTTCTATTATTATTACATCAGCTCCACCTCAGATCATCAAGCATTATTAGATCCTGGAGGTCAGGGACCCCTGCTCTCGGGGAAGGAGTTACAGAAGGGTATGGATTCCAGAAGACAGAGCTCACTGGGGGCCTTCTCAGAGGCTGCCTGCCACAGGGGCTACACACTGGGTTATTTGTGTGAGGGCATGTGAGACAGACAGAGATGGCTGTTTACAGTACACTGGAGTCTCTGGTTCTAGACTCTTTTACCTAAACCACAGATCTCTTTCCTTCACTGTACTTGTGAGGTCAATATATTGGTCTTTGAGATGTTGACAGGATCAGGGTACTTCTGTGTGCCTTCCTCTGTGTTTTGGGGGGATATATGGTAGCAGCCCATTTTTAGATAAAATAAACCAAAAAATATCTATACTGACCAATTTACAGATCGGTTCAGTAAATGAAAGGAAACAAGTTGATAAAACTATAGAAACGCTTAATGCATTGAGGTTTTAATTTTTCTACCTTTAAAACATATAAATACTCTTGCTCATATTCAAGGTGATCAGAAATGTAACAGTTATCTTAGAGTCTCATTTTGATTAATTTATTGAAGAGTACAAGTAAATTTTGGATAAAAAATAGGCTTGAATGTCAGTCTTCCTTTTAATTAGCTATAAGTTATTTCTTTTAGTGTCCAATTATGATACTTTGAAAGGCAAAGTAAAAAAATGCTGACACATCCCAGTTGAGTCTTAAATGCCAATTATTTAGTATTTTTTACTATGGAGGGGTTGCTATCTATCTTGTCTGGTCAGGTGTGGTGACTGACTTGATGGACAACTATGAGTAGTTTGAAAATGAAGAAAATCCTCTTTCTTACCTCCCTCTTAACTTTGCAATGTGAAGGTAATGCAAGCTGAGTTGACCTTTCTAAAATAATACTAGATGGCTAGTCTTAGGAAGGTCAATTCAGCTTCATTACCTTCACAGTGCAAAGTTAAGATGGCAGCCTACTCCAGTATTCTTGCCTGGAGAATCTCATGGACAGAGGAGCCTGGACAGCTATAGTCCATGGGGTTGCAAAGAGTGGGACACGACTGAAGCAACTTGGCATGCACACACGCACAGCTAGGCTTAATTAGCTTTAAGAGAATAAACACAAAGAGATAGCTCTCTGTAAAAAACTTAAACATATGTCAATCCTATTTTGCTCTTCTTGAAGAATGTACTCCCTTTTAGATCTATTATGAACATCCTAAAACCTTAATTCCTTCAAGCAAGAATCTGAGAGATCATAATTTTATTCTACTTAGGAAGGTGTTAAGCCAACTTTGGAATTTGAACTTCATGTTTAAAGGCTTTGCAGTTCTTACCTGGGTGTTTTTAAAATAATTTGATTGGAGTATAGTTGATTTCTGTTTTGCTACTTGCTGCTGTACGGCAAAGTGAATCAGTTATACATAAGCTGATACCCACTCTTCCATAGATTCTTTTCCCATATAGGCCATTACAGAGTGCTGAATAGATTTCCCTCTGCTATACAGTAGATCCTTATTATTTGTCTATTTTATATATAGTCCTATGTGTATGTCAAGCCCAGTCTCCCAGTTTATCCCTCCCTACCCCCATTTCCCCCAGGTAACTGTAAATTTTGTTTTCTACATCTGGGACCCTGTTTTGTAAATAAGTTCATTTGTGCTTTTTTTTTTAAGATTCCATACATAAATGATATCATATGGTATTTGTCTTTCTCTGACTGACTCAGTATGACAGTCTCTAGGTCCATCCTTGCTTCTGCAAGCGGCGTTATTTCATTCCTTTTTACAGATGAATAATATTCCATTAGGATCCCTGGTGGCTCAGACAGTAAAGAATCTGCCTGCAATGCGGAAGACCCAGGTTCAGTCCCTGGGTTGGGAAGATGCCCTGGAGAAGGGAATGGCAACATATACACATATTCCATTGTGTATATGTACCACATCTCCTTTATCCTCTGTTGATGGGTATTTAGGTTGCTTCCATGTCTTGGCGGTTGTAAATAGTGCTACAGTGAACACTGGCGTGCATTTATCTTTTCAAATTAGAGTTTTCTTCAGCTATATGCCCAAGAGTGGGACTCCCAGGTCATATGGTAGTTCTATATTTGTTTTTTAAGGAACCTCCATACTGTTCTCCACAATGGTTGTACCAATTTACAATTCCATCAATAGTGTAGGAGGATTCCCTTTTCTCCACACCCTCTCCAGCACCTTTTGTTTCTAGATTTTTTGATCATAGCCATCTGACTGGTGTGAGATGATACCTCACTATACTTTTGATTTGCATTTCTCTAATGATTAGTGATGAGTATTTTCAATTCTAATAACAATTACTGCTCTAGACCTCATCCTGTGGGAACTAAAAATAATGTCTAACTGTGTTCCCACTTGGCCACATTCCAGCCATTCTCTTGTCCCGTGACAATGCCTTGACCTTTCTCCTTGGGCAGTAGCCCTGCCAACAGTCAGGGAATCTGCCCTCAGCTTCCTGGTTTGCCAGCATACAGACCAGTGGACAGCAAGAAGAGGGAAATGAAGACAATCATACAAGCCTCCAGCATACAGAGCTGTGGGGACAGCAAGATGAGGGAAATGAAGACAAGCATACAAGCCTCCAGCATATAGACCAGTAGAAAGCGAGGAGGAGGAGATAGAGAGAGTCATACAAGCATACAGACAGTGGACAGCAAGAAGAGGGAGATAAAGATAGTTATACAAGCCTCCAGCATGTAGACCAGTGGACAGCAAGAAGAGGGAAATGAAGACAGTCATACAAGTCTAGACTAAATCTGTATGCATCATGGGCCACCTAATAATCTTTACTGCCCCTTCAAGTCAATATTCCTTCAATGAGAGTTCCATGTTTATTTAGAAAGAGGACTGATTTTATAGTGTTCAAAAGTGTGTCTATACCAGATTCACTTAGTAGTTCACTTCTGTGGGCTGAAGACAATGTCAATAACCTAAAAAATTAATCTGAAAATTTAGTTCAGTTCAGTCGCTCAGTCATGTCTGACTCTTTGTGACCCCATGGACTGCAGCATGCCAGGCTTCCCTGTCCATCACCAACTCCCAGAGCTTGCTCAAATTCATATCCATTGAATCAGTGATGCCATCCAATCATCTCATCCTCTGTTGTCCCCTTCTCCTCCTGCCTTCAATCGTGCCCAGCATCAGGGTCTTTTCTAATGAGTCAGTTCCTAGCATCAGGTGACCAAAGTATTGAAAGTTTCAGCTTCAGCATCAGTCCTTCCAATGACTGTTCAGGACTGATTGCCTTTAGGATTGACTGGTTCAATCTCTTTGCAGTCCCAAGGACTTTCAAAAGTCAACACCACAGTTCAAAAGCATCAGTTCTTCAGTGCTCAGCTTTCTTTATAGTCCAACTCTCATATCCATACCCAACTACTGGAAAAACCATAGCTTTGACTAGACAGACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTTAATATGCTGACTATGCTTGTCATAGCTTTTCTTCCAAGGAGTAACCATCTTTTAATTTCATGACTGCAGTCACCATCTGCAGTGATTTTGGAGCCCCCAAAAATAAAGTCTGTCACTGTTTCCATTGTTTGGCCATCTATTTGCCTGAAGTGATGGGACCAGATGCCATGATCTTCATTTTCTGAATGTTGAGTTTTAAGCCAGCTTTTTCACTCTCCTCTCTCACTTTCATCAAGAGGCTTTTTAGTTCTTCTTCAGTTTCTGCCATAACGGTGGTGTCACCTGTATATCTGAGGTTATTGGTATTTCTCCTGGCAATCTTGATTCCAGCTTGTACTTCATCCAGCCTGGCATTTCACATGATGTACTCTGCATATAAGTTAAATAAACAGGGTGACAATATATAGCCTTGACATACTCCTTTCCTGATTTGGAACAAGTCTATTGTTCCATGTCCAGTTCTAACTGTTGCTTCTTGAACTGGATACAGATTTCTCAGGAGGCAGGTAAGGTGGTCTGGTATTCCCATCTCTCTCAGAATTTTCCACAGTTTGTTGTGATCCAGTCACAGTCAAAGGCTTTGGCATAGTTGATAAAGCAGAAGTAGATGTTTTTCTGGAATTCTCTTGCTTTTTCTATGATTCAACAGATGTAGGCAATTTGATCTCTGGTTCCTCTGCCTTTTCTAAATCCAGCTTGAACATCTGAAAATTCATGGTTCACATACTGTTGAAGCCTGGCTTGGAGAATTTTGAGCATTACTTTACTAGCGTGTAAGATGAGTGCAGTTGTGTGGTAGTTTGAGCATTCTTCAGCATTGCCTTTCTTTGGAACTGGAATGAAAACTGACCTTTTCCATTCCTGTGGCCACTGCTGAGTCTTCCAAATTTGCTGGCATATTGAGTGCAGCACTTTCACAGCATCATCTTTTAGGATTTGAAATAGCTCCACTGGAATTCATCACCTCCACTAGCTTTGTTCCTATTGATGCTTCCTAAGGCCACTTGACTTCACATTCCAGGATGTCTGGCTCTAGTCCAATGATCACACCATTGTGGTTATCTGGGTCATGAAGATCTTTTTTGTATGTTCTTCTGTGTATGCTTGCCACCTCTTCTTAATATTTTCTGCTTCTGTTAGATTCAAGGGATTAGATATGATAGAGTATCTGAAGAACCATGAACGGAGGTTCGTGATATTGTACAGGAGGCAGTGATCAAGACCATCCCCAAGAAAAAGAAATGCAAAAAGGCAAAATGGTTGTATGAGGAGGCCTTACAAATAGCTGAGAAAAGAAGAGAAGCTAAAGGCAAAGGAGAAAAGGAAAGATATAAGAATCTGAATGCAGAGTTCCAAAGAATAGCTAAGGAGAGATAAGAAAGCCTTCCTCAGTGATCAATGCAAAGAAATAGAGGGAAACAATAGAATGGGAAAGACTAGAGATCTCTTCAAGAAAATCCAAAAATTACCTTTTAAAAAATACTTCTCTATAATTCGTCCTCAATTTTCTTTTGCAAATTCCGAAACCAGAGAAGCTCTCAGGGGCCTATGTTCATAATCAGTACACAAATCCACCCTTGACTCTCTATAACGTCTCTCTGTGTATGTTTGTCTTGCAG
Seq C2 exon
GGTGACTATGAATGAAAAGGACAATTTCATGAATGCTGAAAATCTGGGGATCGTGTTTGGGCCCACCCTGATGAGACCTCCTGAGGACAGCACCCTCACCACCCTCCATGACATGCGGTACCAAAAGCTGATTGTGCAGATCTTAATAGAAAATGAAGATGTTTTGTTTTAATTCACCTGGAAAATGAGTTGAGTGGCCCCAGCCCCATCTAAGTTGATAAGGCTAAAGAAATAAAAACATCTCTTGCACTTGATTTGTTTTCCAAACAAGTGATGGAATTTCCTGGACCACAGTGGATTGCCAGGTTGGCTACTGTGTCTCATAGACACTGGCCCCTCCACGGGAGAACAGCAAGGATGAGGGCGAGAAAAAGTACTCACCTCGGGTCTTTGCCGTGCCTCGTATGTCTGTCTGTTTTGTTGGAAGAGTGATTAATAAATCTTTCTTTAACTTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020931:ENSBTAT00000027880:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(22.6=100)
A:
NA
C2:
PF0062022=RhoGAP=PD(21.3=56.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]