RnoINT0036175 @ rn6
Intron Retention
Gene
ENSRNOG00000009411 | Chn2
Description
chimerin 2 [Source:RGD Symbol;Acc:620140]
Coordinates
chr4:84450921-84452972:+
Coord C1 exon
chr4:84450921-84451026
Coord A exon
chr4:84451027-84452767
Coord C2 exon
chr4:84452768-84452972
Length
1741 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
3' ss Seq
TCTCTGTGCTTGCCTTACAGGGT
3' ss Score
11.42
Exon sequences
Seq C1 exon
AAATCTCCAATGCAGATGAGAGGCTTGAAGCTGTCCATGAGGTCCTGATGCTGCTGCCTCCTGCCCACTATGAGACCCTGCGCTACCTGATGATCCATCTCAAAAA
Seq A exon
GTAAGCCAAAGCCTCTGTCCCTGACCACCCCTGATCTACCCAAGAAGGCATTAAGAAGCCCCATGGAGAGAGTACATAGAGCGGCTGTCAGTGTGGGATGTAGCCTGGGCTCCCCCAGACCACAGCTTCTGTAGGCTGACTCTGGGGAAATATGCCCAGAAGATGGCTCAATGATACTGGTTTCCTATTCACACCTGACTCTTCATCTCCCACTGATCAGCGTCAATTGTCCCAAAACAAGCGAAGGTCTCACTTCAGTGGTGCTGGTCCTTTATGAATCACAGCGGGTTCTTCAGCCCCAGCTGACCAGAACCACAGTTCAAACTATTGTATGGACAGCTCCGAGACAGCCTTTGCTTCCTTCTGAAACCTCACAGGCCAGGCCTCCATCATCTTCACTGTTCTCAGAATTCTTAACTTCCATGATCACACAGAGTACACCCCAGTAAGCTTGGAGCCTTAATGGGCTTTTCTAGCCCTAAGTTCCAAACACCTCATGGGGTCTGTTATAACTACAGTTCACTTCAGGTACTCATTTCTGTCCTAGTTCAGTTTCTATGGCTGTGATAAAGGCCATGACCAAAAGCAGCTAGGGGAGGAGAGGTTTTATTTGGCTTACGTTTCCATTCCATAGTCCATGATTGAGGGAAGTCAGGGCAGGAACTCAACCTGGAGGCAGGAACTGAAGCTGAGGCCATGGAGGAACTCTGCTTACAAGTTTGATCTACATGGCTTCCTCGGGATACTTATACAACCCAGGACAGCTCAGGGATGGTACCATCCACAGAGAGATGGGGCACGTCAGTCATTTTCTCACTGAGGTTCCTCTTCCCAGAATGAAGCACGACCTCTTTCCTGTTTGTCTTTTAGCTGTGCAGCATGAAAATTATTCAAACTGAGTTTACTAAGACTAACATGAAGTCGCTGATTTGACCGCTCCAAGGGGAATAGAGAGCGAGGGATTATCTGTGTTCAAAATCTAAGTACATTTTCAGGCGTGCTCCTTTCTGTCAGCGATGGGCAGTCTAAAAGACACAATTCCTGAAGTCAGGAACCTAGGGAATCATTATTCATCTCATAAGGACACCAGTAAAGCGACTCTAGGGCTTATTAGATTTCCTCCTTAAAGCCTCTTTGCTTCTTCTCTTGATGCTGGTCCAACAATAACGATTGCTCTGTACCCCATCCTTTGGGAACCAGGCTTGATAAACAATGGGCCTCCAGTCTGGCCTCATTCCAGCCATTCTCCTGCCCCGTGACAGTAGCCAGGGTCTTCCTAAGCACACAGCAGCCTGTTCTACAAACAGTCTTTCTCCTGTGGTACAGAGCCTGCCTGTTCTCAGCCCCTCTCCAGCATCAGACCACTAGGAAATGGTGACACAAAACAGACTTCCATATGAGGCCCATGAAGGTAGCATGGGTCAGCTGGTGACCTTCTGCCCCTTCAGACTGATATTATCCAACTGACAGTTGCACATTTCTTCAGGAAGGACAGAGTCCCAATCCTTACTGTTCATAGCTGATTCTAGTCATTTTATTCTACTGGCTGAAGACAGTAGCAATAACTTAAAAAGGGAAACAAAGCAGAAAATTACCTGTTAGCAAATGTCTTCCTGCTATTCTTATTCTCCGCTTGTTTTTGCACACCCCTGACCCCAGAGATGATCTCAGGCCTGCTGTACATAGCTAGTGTGTCAGTCCTTCTGAAAATCTGCCTAAGGTCTCTGTGCTTGCCTTACAG
Seq C2 exon
GGTTACCATGAATGAAAAGGACAATTTAATGAACGCAGAAAATCTGGGGATCGTGTTTGGGCCCACCCTGATGAGACCCCCTGAAGACAGCACCCTCACCACCCTCCATGACATGCGGTACCAAAAGCTGATCGTGCAGATTTTAATAGAAAACGAAGATGTTCTGTTTTAGTCCATCAGGGAAGTGAGCTGATAGAGCTAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009411:ENSRNOT00000012655:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(22.6=100)
A:
NA
C2:
PF0062022=RhoGAP=PD(21.3=56.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCAATGCAGATGAGAGGC
R:
GCTCTATCAGCTCACTTCCCTG
Band lengths:
302-2043
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]