BtaINT0038848 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019781 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr2:73544786-73550858:-
Coord C1 exon
chr2:73550795-73550858
Coord A exon
chr2:73544950-73550794
Coord C2 exon
chr2:73544786-73544949
Length
5845 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TGGTTTCCCTTTGTGTCTAGGTT
3' ss Score
9.39
Exon sequences
Seq C1 exon
TCGAGTAGAATTGAAAAGATTGTGTGAGATTTTCACCCGAATGTTTGCTGACCCTCACAGCAAG
Seq A exon
GTAAGGTCTGAGAACCTGCCCACTTGTAACCTCTTTGCATGTCTTTCTATATAATACACTACTTCAGAGTGGGAGAACAGCCCCGCCATGCAGTGTAGCCCTTCCAGACTTATTTTAACAGTAGTTTATATCTTTTGAAGACAGAATTCTTAGAAACTTCTCTTGTCCATACAGTGTCATTAATAAAGTGCATTTCATGTAAGGATTACCCTGTAGAGAATCAGATGTAGTCTTTTATTCACTCAGCGAACAGTTTTGCATACTTCATGGAAGTACGTAGGCTGGATGCTAGGAGGTAACAGTGTATTATAACGCCTTTTTAGAAAGTTACAGTAGTGAAGAAAATAATCAAGTATACAAATATTTTTTTGGTACCCATGTACAATTTGTCTGTATAGAACAAGATAGAAAAATGATAGCATTTATAGAATGGATTTACTGAAAAGCCACATCAAATATTTCTCCAAATAGATTGCCACTTCTAAGAATTTGCTAGACGGTGGCCACCCAGCTGATGCCCATGCCTCTGGGGGGCCTGAGGGCCGCCTTTTGACAAGGGCACCCTGCTGAGTACCCCAGAGTGAGAGACAAGCCCTTTCTAGGAGTGGAGCTGAGAGCAAGACCCTTGACAAAAGTTTACTCGGAGTCTAGATTTTAAATAAAAGCCAGAGTTTGGGAGGAAGCCTTTGAAGGTGTTGGATGGTTTTAGAGACAGAAAACAAGAGGAGTGAAGATATCAGGAAAGTAAAAGGGTGGATAAAGGACCAAAACAACCTTCAGTTCAGTTCAGTTCAGTTGCTCAGTCATGTCCAACTCCTTGCAACCCCATGGACCACAGCACGCCAGGCCTCCCTGTCCATCACCAACTCACAGAGTTTACCTGAACTCATGTCCATCAAGTCAGTGATGCCATCCAACCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCTCATCTTTCCCAGCATCAGAGTCTTTTCAAATGAGTCAGTTCTTGGCATCAGGTGGCCAAAGTATTGGAGTTTCAGCTTCAACATCAGTCCTTCCAATGAACACTCAGGACTGGTCTCCTTTAGGATGGACTGGTTGGACCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAATAGCATCAGTTCTTCAGTGCTCAGCTTTCTTTATAGTCCAACTCTCACATCCATACATGACTACTGGAAAAACCATAGCCTTGACTAGACAGACCTTGGTTGGCAAAGTAATGTCTCCACTTTTTAATTTGCTGTCTGGGTTGGCCATAACTTGCCTTCCAAGGAGTATGCATCTTTTAATTTCATGGCTGCAGTCACCATCTGCACTGATTTTGGAGCCCCCAAAAAATAAACTCTGCCACTATTTCCACTGTGTCCCCATCTAATTGCCATGAAGTGATGGGACCAGATGCCATGATCTTAGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCACTCTCCTCTTTCACTTTCATCAAGAGGCTCTTTAGTTCTTCGCTTTTTGCCATAAGAGTGGTGTCATCTGCATATCTGAGGTTATGGATATTTCTCCTGACAATCTTGGTTCCAGCTTGTGCTTCTTTCAGCCCAGCGTTTCTCATGATGTAGTCGGCATATAATAAGTTAAATAAGCAGGGTGATAATATACAGCCTTGATGTATTCCTTTCCGAATTTGGAACCAGTCTGTTGTGCCATGTCCAGTTCTAACTGTCGCTTCCTGACCTGCATACAGGTTTCTCAAGAGGCAGGTCAGGTGGTCTGGTATTCCCGTCTCTTTCAGAATTCTCCACAGTTTTTTGTGATCCACACAGTCAAAGGCTTTGGCATAGTCAATAAAGCAGAAATAGATGTTTTTCTGGAACTCTCTTGCTTTTTCGATGATCCAGTGGATGTTGGCAATTTGATCTCTGGTTCCTCTGCCTTTTCTAAACCAGCTTAAACATCTGGAAGTTCACAGTTCAAGTATTGCTGAAGCCTAACTTGGAGAATTTTGAGCATTACTTTACTAGCATGTAAGATGAGTGCATTGTGCAGTAGTTTGAGCATTCTTTGCCATTGCCTTTCTTTGGGATTGGAATGAAAACTGACTTTTTCCAGTCCTGTGGCCACTGCTGAGTTTTCCAAATTTGCTGGCATATTGAGTGCAGCACTTTCACAGCATCATCTTTCAGGATTTGAAATAGCTCAACTGGAATTCTATCACCTCCACTAGCTTTGTTTGTAGTGATGCTTTCTAAGGCCCACTTGACTTCACATTCCAGGATGTCTGGCTCTACGTCAGTGATCACACCATTGTGATTATCTGGGTCATGAAGATCTTTTTTGTACAGTTCTTCTGTGTATTCTCGCCACCTCTTCTTAATATCTTCTGCTTCTGTTAGTCCATACCATTTCTGTCCTTATTGAGCCCATCTTCGCATGAAATGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGCTGCAGTCCATGGGGTCTCTAAGAGTCGGACACGACTGAGCGACTTCACTTTCACTTTTCACTTTCGTGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGATGGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTCAGACATGACTGAAGTGACTTAGCATAGCATAGCATCGCATGAAATGTTCCCTTGGTATCTCTAATTTATCTTTAAGAGATCTCTAGTCTTTCCCATTCTATTATTTTCCTCTATTTCTTTGCACTGATCACTGAGGAAGGCTTTCTTATCTCTCCTTGCTATTCTTTGGAACTCTGCATTCAAATGGGTATATCTTTCCTCCTCTCCTTTGCTTTTCGCTTCTCTTCTTTTCTCAGCTATTTGTAAGGCCTCCTCAGACAGCCATTTTGCTTTTTTGTGTTTCTTTTTCTTGGGGATGGTCTTGGGTCTTGGGGATCCCTGTCTCCTGTACAATATCATGAACCTCTGTCCATAGTTCATCAGGCACTGTCTATCAGATCTAGTCCCTTAAATCTATTTGTCACTTCCACTGTATAATCATAAGGTATTTGATTTAGGTCATACCTGAATGGTCTAGTGGTTTTCCCCACTTTCTTCAATTTAAGTCTGAATTTGGCAATAAGGAGTTCATGATCTGAGCCACAGTCCACTTCCAGTCTTGTTTTTGCTGACTGTATAGAGCTTCTCCATCTTTGGCTGCAAAGAATATAATTAACCTGATTTCGGCATTAGCCATCTAGTGATGTCCATGTGTAGAGTCTTCTCTTGTGTCATTGGAAGAGGGTGTTTGCTATGACCAGTGCGTTCTCTTGGCAAAACTCTATTAGCCTTTGCCCTGCTTCATTCTGTACTCCAGGGCCAAATTTGCATGTTGCTCCAGGTGTTTCTTGACTTCTACTTTTGCATTCCAGTCCCCTATAATGAAAAGGACATCTTTTTTGGATGTTAGTTCTAAAACGTCTTGTAGGGTCTTCATAGAACTGTTCAACTTCCATAGAAATTGAGAAAACCTAAAATCAACACAAGCAAATCTTAAAATACTTGATGTGCAAGCTTTAACTATCTTATACTATCGTTTTCCTAGTAAAAATGGTCTCTTCTAAGTCCTACCAGGGGAAGGAAACCTGTCATGGCCAGAAGCCTAGGCAGTCATCATCTCCCTTCTTTTCCTGCCCTTTCCTCCTTGTGGAAATTGTCCATGAAATGTCAGTCATCCACCTGCTGTGCTCTCATTCCACACTGGCTGAGCACCCACTCTGGGTTAGGGGTACAGAAAACATTGCACCCCTCCCTTGCTTCTGAGATGCTCACCAGAGCAGGGGAGAGTGAACACAGGGATTCTCCTATTTTTTGCTGGGGGGCAACAATTCTCCTCAGTATTGGTCTTGAAACACGTCTTAAAATTCCTGTTTTGACCCTCACAACAAGGTTGACATTCACAATATTAATAAAGTCCAAGAAGCATCGATTTTAAAAGCCACATAGATGTTCAGAGATAAAATTATCAAGATTTTCTGTAAGATAATATTATGAGCAGTAAGATTTAAAGCATAAGACTCGTAAGATATATAGCATAAGGGATATTAGGTGGATTTGGACATTGATGAAATTTCTATTACCTGTCACCTCTAGATTGCTGATTCAGAACATGAGGATAAAGAATGTGAGGATAAAGAAGGAAATTTGTTTCCATCAGAAGGCTCTTGTACAGTGAGTTTGGAGGTCTCAGTTTAGTTAATATTTGCTAGCTGCCTTAGTGCTAAGCCAGGAGTCCTGCAGCTGGGACTCATTGACTTCTCTCTGAGCTGTCTCCCGAGAGACCCCTGGTGGTTAATAGTTCCTGCGCTATAACTGAGTAAGTCTACAATAGCTGGTTTGTCCCAGCAGAACACAACTCATTAACCAAATAGGGACACAGTGCTACCATTTACCTCTCTGAAATTGGTTCAGGGATAAGCCACTGTGAACTTTGTCTCACAGGAGGTAGCAGTGATGATCGCACCGTGGTGTGAGAATTATGTCAGCTGTCAGTCTGTTTTATTCTAAGCTGTACTCTTTGATAATATTAGTATAGTTTTTATAATATCTTTTTATAGAGATAACACTTTGTAGTATCTGAATTGGCATACATCAAAATAGATGATAGAAATGAAAAGCAATAGGTATGCAAGTTTTTTTTTCCTTACCCTACAGTAATAGTTGTTGAATGCTAGAAATGAAATAAATATAGTGGTTAAAAGGGTTTTTTAAAGAGAGAGAGAAGGAAGGAAGGAAGGCTGGCCTCCAAGATTAGACTCATACTTTTCAACAAAGTTAATATCTCTCTGTACTGGATTTTAAAGGCATGTAGAGGGAGGGGAGAGGATTTTGTCAGTTCATAGCCTTTTCAGGCCTTTTAGGAAACTGCATGAAAATGATATGACTTCACTGTGGACTAACATGGACTCTGTTTCGTTGCATGGCCTGGTTTGCGGTGGAATTCACAACAGAGAGTAAGTTCCAACCCCTTTTCCTTTATCTCTTTTCGGTACTACGTTTGCCGTCTATGCCGTGTCCAGTTGTTAACATTGTCACCGAAGTTAGGAGTCTGGGCAAAGGCCAATTGGGCATTTTCACGTTTTGAAGACTTGGGAGGAAATTATGAATTAAACATGTGAAATACTTGGTTTCCCTTTGTGTCTAG
Seq C2 exon
GTTTTCAGTATGTTTTTGGAGACCCTTGTGGATTTTATAATAATTCATAAGGATGACCTGCAAGACTGGCTTTTTGTTCTTCTCACACAATTACTGAAGAAAATGGGAGCGGATTTACTTGGATCTGTGCAAGCAAAAGTTCAGAAGGCTCTTGATGTCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019781:ENSBTAT00000065657:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(9.0=100),PF116403=TAN=FE(29.2=100)
A:
NA
C2:
PF123483=CLASP_N=FE(23.1=100),PF116403=TAN=PD(16.7=21.8)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]