GgaINT0049997 @ galGal3
Intron Retention
Gene
ENSGALG00000011645 | CLASP1
Description
NA
Coordinates
chr7:27698127-27698528:-
Coord C1 exon
chr7:27698526-27698528
Coord A exon
chr7:27698291-27698525
Coord C2 exon
chr7:27698127-27698290
Length
235 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
GACACTTGTTTTGCTTATAGGTC
3' ss Score
8.58
Exon sequences
Seq C1 exon
AGA
Seq A exon
GTAAGTGTATTCTGCTCCTCTTCCTTCATTTGTTTCATGTGGTATTTTAATACTGCACATTATATATGTCTGTTGTCTGATTCTTAATTTCAAAGCAATGAGGTCACTAAAATCATCCATTCATGAAACTGTCTGTAACGATAATTCTGAAACTTGGGTTTTTAAAACTCTCCACTTTGATTAGTTTTTATTTGAAGCATAGCCTTCCTTTTTGTGACACTTGTTTTGCTTATAG
Seq C2 exon
GTCTTCAGCATGTTTCTGGAAACCCTGGTTGATTTCATCATCATTCACAAAGATGACTTGCAGGATTGGCTTTTTGTTCTCCTGACACAGTTGCTGAAGAAAATGGGAGCAGATTTGCTGGGGTCTGTGCAGGCAAAGGTTCAGAAAGCTCTGGATGTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011645:ENSGALT00000019030:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.073
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]