MmuINT0036717 @ mm9
Intron Retention
Gene
ENSMUSG00000064302 | Clasp1
Description
CLIP associating protein 1 [Source:MGI Symbol;Acc:MGI:1923957]
Coordinates
chr1:120441970-120444605:+
Coord C1 exon
chr1:120441970-120442036
Coord A exon
chr1:120442037-120444441
Coord C2 exon
chr1:120444442-120444605
Length
2405 bp
Sequences
Splice sites
5' ss Seq
GTAACCAGG
5' ss Score
-25.45
3' ss Seq
TTGGTTTTTCTCTTATGCAGGTT
3' ss Score
9.93
Exon sequences
Seq C1 exon
TCGAGTAGAATTGAAGAGACTGTGTGAGATTTTCACCCGAATGTTTGCCGACCCTCACAGCAAGGTA
Seq A exon
ACCAGGCCTTAAGTATATTCTGTGTGCATGCCTGTGCAAACTGTAATACACCCCAGAACTGAGAAAGAATTTCCCAACAGTCTTCATTAACATCTTCCAAAGTGTAATTCTTGGGAACTTACATGACCATTAGTTTCAAATTAAGTGTGCCTCAAATAAGGAATGTCATGAACGGAATCAGATGGAGTCTTTTATTCCATTAGCAGGAATTTATGTCTATCTCCTTTAGCCAGTGTGCTAGGTTTTAGAATATAATATAGTATATTTAAAAAATGTTACAGTAGTGGGAAAATATATATGGGTACTTTGGTATCTCAGGTAGAATTTATTTATATACTTTATACATTTATATGCTTTATGTATTTATATTTATATATGTTAAATATAGTATCTATTTGTTGCCTTTATTATAAAACCAAATTCGGCTATATCTTCTGATGGAATCTGGCTGTTCCTAAGAACTTGGTAGATGGAGTTCTGCTAGGTAGTACTTCTGCCTTTTGGGATACCAACCTTTAAGGACTGCCTTTTCAACAAGAGACTCCTTCCTCTCCCTAATCTTTCTCAGAAACCCCACCAGGGGTAGTGTTGAAAGGGGGCCTCTTTTTAAAAGTCCCTTGGATTTCACTGTATTTTAGCTAGTAAGTGCTAGTGATATCTAAAGAGTAAGAAAATGGAGAAATGAGAGAGAGAGCGCTAAGGGGTTAAACACCAGAAAGATACTAGAGTGTGGAAATGGATAGGAACTAACCTCATGTGGACAGGATTGTACCTAGTAAAGGTAGTCTCTTCCAAGTCATACTGGAGAATAAAGCCTGTGATGAGCAGAGAGTCCAGCAGCTTCCTTTTTCCTTCTTTCCTACTCTTGCTTTCTCATAGGAATTGTCCTTGAAGTAGTAAATAGCCATCCACCCATCTGTTGATTCACTCATTTACCCATCAGTTCATCCAGCCATCTGTCCACTAACTACTATCTACCTATCCATTCATCTGTCTGCTTAACTAAAGTCATCACCCTAGCCCTCTATTCATCCATGTACCCACCCTCCATCCATTCACCCAGTCATTCAGGATTTCTTGAATTGCTTCCATGAGCTAGGGATGTAGAAAAACAAGGTGAAACAAGAGCCACAGGGTACTTCTCCTCCCTCTTGTTCCTGCAACAATACTCACTCTATCTGCTATGAAGGCCTTCTGGAAAGGACAGCATCAAAGGCGTCAATTTTAAGCCCCCAAAAGACTGAGGTTAAAGTCCAAATATATAACCAAAGATCTTAACCATCAATTTTTTCTCTATGGAACTATTAAGAGTGATACAATTTAAACCATAAGTATAACATAACTGGTAAGAGTTATACCATAAGGGATATTATGTTAGATGGTTTCACATTGATGAACTTTCTGTTACCCATTACCTCTAGATTGCTGATTCAGAAGCAGAATGTGAGGATAAAGAAGGAAATTTGTTTCCATCAGAAGGCTCTTGTCCAGTGAGTTGGAGGTCTCAGTTTAGTTCATATTCTTAGCTGCCTGAGCCAAGCTAGGAATTCCCACCTATCTATCAGAGCTCGCTGACTTCCTGAGCTGTCACTGGAGGCCCCTTGTGGTGAATAGTTGCTGTGATAGAATTGAAAAGTGTGGGGTGGGTGTCCCAGTGCAGCACTAGGGTTGGGGAGCCTGGTGCCACTTCCTTCCCTGAGACAGGCTTAGGGATGCTCCACTCTGCACTCTGTTTTACCTCGAGTGGCAGCAGTAACTGCGTAGTGGCCTGAGAATTTGTCAGGAGCTCCTCTTACAACCTTATTCTTAACATCTGAAATTGGCCCACATCAAATTACTTGACAAAAGTCAATGGTCACAGAAACATGAATAGGGCTTCTACCCCTTGACGCCCTGTAAAGGTATGTTGAATGCTAGGGAATGAGTCAGAATAGTATATAACCAGGACAAGACATCACCACCCCTGTCTCTCTCTGTCTTTCTTTCTCTCTCAGAAAACTCTCCAGGATTAAACTCCAAAACATTTATTTCTCTCTGTGCTGACAGTTATGGGTTTATATTGAGGGAGAACATAGTATTTTATCAGTTCGTAGCTTTTTCAGGAAAGGAACTGCATGAAACTGGTGTTACTTTGCTGTGGACTAACATGGAATTTGTTTTGTTGCATGGCCTGGTGTGCGGTGGAATTCACAACAGAGAGTAAGTGTCAAGTACGCCCTCCCCGCTCCCCTGCCCCAAGCCCATCCCCATATTCTGCTGTGTGTTTCCTCTTAAGATGGGAGCAGTAGTTAACCTGAGTGACAAGACTGGGCTAGGCCAGCTCGGGCAGGCATTTGAAACCTTCTCAGGCTGTGGAGGAAGTCATGAAGGCAGGGTGTGAGGTGTTTGGTTTTTCTCTTATGCAG
Seq C2 exon
GTTTTCAGTATGTTTTTGGAGACCCTCGTGGATTTTATAATCATTCATAAGGATGACTTGCAAGACTGGCTCTTCGTCCTTCTCACACAACTACTTAAGAAAATGGGAGCAGACTTACTTGGATCTGTGCAAGCAAAAGTTCAGAAGGCTCTCGATGTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064302-Clasp1:NM_001081276:26
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (disopred):
C1=0.015 A=NA C2=0.085
Domain overlap (PFAM):
C1:
PF116403=TAN=PD(30.9=77.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: