BtaINT0039242 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014546 | CLEC7A
Description
C-type lectin domain family 7, member A [Source:HGNC Symbol;Acc:HGNC:14558]
Coordinates
chr5:100283216-100284666:+
Coord C1 exon
chr5:100283216-100283314
Coord A exon
chr5:100283315-100284528
Coord C2 exon
chr5:100284529-100284666
Length
1214 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
3' ss Seq
ATTGTTGTTGGTATATGAAGGTA
3' ss Score
3.08
Exon sequences
Seq C1 exon
GGCTTTGTGCTGCATCCTCTCATTGGCGTCTGATTGCTGTGACTCTGGGCATTTTATGCTCAGTGATGCTGGTGATAACTGTGGTCCTGAGTACCTCGG
Seq A exon
GTAAGTATTGGTGGGGAAGATGAACAGCAATAGACATTTAATAAGCATTTATGATGTTTCAGGCGCGCTTTTAAGGAAACTTTTTTTTTTTTAATGTGGGCCATTTTTAAGGTCTTTATTCAATTTGTTACAATGTTACTTCTGTTTTATGTTTTGTTTTTTTGGCCCTAAGGCATGTGGGATCTTAGTTCCCAGAGCAGGGATAGAAGAACTCATACCCCCTACACTGTACAGTCAAGTCTTAACCACTGGACTACAAGGGAAGTCCCTCAGGTACTCTCTTAAGAGTATAACATAATCTACCTGGATCTGAACACCGACCCTTTGAATTGATGTTATGAGTTCTAACTTTATTTCTAGGGTCATAAACTAGTTAACATTAGGACCATGATTAGAAATGCAGGTGATCTGTCTTGATAACTCATACTCTTATCTACAAGATCTGCTTGAATAGCTGGTTTCAAAGCTGTGAAATTCCTAGGATAAATTAATGAAAGGAAACCAGTGGAGGTGAAGGAAGTGCAATTGGTGCTTATCTTCCTAAGAGATTAATTCCCTAAAGAATTTAAGCTATTTTTTACATCTCATGAATTAAGGAAATTGTTTTACACCTGTCTTTAAACTCCTTTGGATAATATCAGGAAATATTCAAAGCACTTATGAAATTCTAGGTAGTTATTTTGTAATAGATGAATACATTTCCTTAGATTTTATCATTCATGAATTCCATTTTGGATAAAGTATTATTGTGCCTTTGAAAAGGGTATATGAAAACATGAAAGATTTCTTAACTAGTCATGTGTTTATTGAATACATTCTATGTTATAGTCACCTGGCAGATTCTCAAGGAACTCTCATTTTTAAAATATTATAATAAAGAAGATTTATTACTATTTCAAATCCATCGTGGTACCAAAGGACTATATTCCATTTGCCTCTTACTTTCCCCCATCCTCCTATCTACTTCATTTTTATCTTTTGTATTAAATCTTCTTTATGGAAGTTATTTCTTTTTTCCATCTATTCAAGCTATCACCTATCTATCTACCATCTGTCTCTACCTCTCCATCATCCTCTCCATTATTTATCACTAATCAAGAATGTGTCCCTTTATATTCCAACAAAAATATAGGTTTTTGAATTTTAATTCTCAAACATAGTAAAAATGACTTTTTTTTTTTTTCTGTCATTACTATTGTTGTTGGTATATGAAG
Seq C2 exon
GTATTTGGAGATCCAGTTCAGGGAACAACCTGTTGAAGAGTGACAGCTTTCCATCAAGAAATAAAGACAACCAGAGTCAACCCACACAATCATCTTTAGAAGATAGTGTGATACCTACCAAGGCTCTCACGACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014546:ENSBTAT00000019331:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.489
Domain overlap (PFAM):
C1:
PF083915=Ly49=PU(82.4=82.4)
A:
NA
C2:
PF083915=Ly49=FE(60.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGTGCTGCATCCTCTCA
R:
GTCGTGAGAGCCTTGGTAGGT
Band lengths:
231-1445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]