MmuINT0037270 @ mm9
Intron Retention
Gene
ENSMUSG00000079293 | Clec7a
Description
C-type lectin domain family 7, member a [Source:MGI Symbol;Acc:MGI:1861431]
Coordinates
chr6:129418887-129421015:-
Coord C1 exon
chr6:129420917-129421015
Coord A exon
chr6:129419022-129420916
Coord C2 exon
chr6:129418887-129419021
Length
1895 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
GCTGTTCGTGACGTATGAAGCAT
3' ss Score
1.63
Exon sequences
Seq C1 exon
GAAGCCAGGCTCCATCTTCACCTTGGAGGCCCATTGCAGTGGGTTTAGGAATCCTGTGCTTTGTGGTAGTAGTGGTTGCTGCAGTGCTGGGTGCCCTAG
Seq A exon
GTGAGTATGGGTGAGGGAGGTTGATGCAGTCGTAAACAGTGATTATGCAATTAATTGATGCCAAGAACTCTCTCAAGGGCTTGGCATGCATAACCTCATTTAATCTGTATATTAATTCCATTAAGTTTGTGCTATTAATTTCTGTTTTAGTTATAGGAGAATTGAGAGAGTGGAAGATTAACTCTTCCATAGTTATAACCTAGTTATTGGTGAGATTATAAGAAATGGTGGATTATAGAAAATCTGCTTAGTAAAACATATATTCATGAGTATATTACTCTACTATAGATAGGTGATTTTCTTTTTAAAGTAAAACTGAAAGTAAAAGTTAGTGGAGGGAAACTTGCAGAGTCAAAAGAAGCCTAATCTTTCCTAGGAGACAGATGTATTAAATGAGTTTTGTGTAATTTTTGAACATCTCATGACATGATACATGGGAATTATCTTTTTTTTATTTAGGTATTTATTTCAGTTACATTTCCAATGCTATCCCAAAAGTCCCCCACACGCTCCCCCACCCACTCCCCCACCCTCCCACTCCCACTTCTTGGCCCTGGCGTTCCCCTGTACTGAGGCATATAAAGTTTGCACGACAAATGGGCCTCTCTTTCCACTGATGGCTGACTAAGCCATCTTCTGATTCATATGCAGCTAGAGACACGAGCTCTGGGGAGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGTTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCGAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCAACATAGTCTCACAAGAGACAGCTATATCTGGGTTCTTTCAGCAAAATCTAGCTAGTGTATGCAATGGTGTCAGTGTTTGGAAGCTGGTTATGGGATGGATCCCCGGATATGGCAGTCTCTAGATGGTCCATCCTTTCATCTCAGCTCCAAACTGTGTCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCCAAATCTAAGAAGGGGCAAAGTGCCCACACTTTGGTCTTCGTTCTTCTTGAGTTTCACGTGTTTTGCAAATTGTATCTTATATCTTGGGTATTCTAAGTTTCTATGCTAATATCCACTTATCAGTGAGTACATATTGTGTGAGTTCTTTTGTGATTGGGTTACCTCACTCAAGATGATGCCCTCCAGGTCCATCCATTTGCCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTCTCTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTACCAGCTTCTTCTTACACATGATCTTTAGTAAAAAATTATCTTGACTCTGCCAGGTACTGCCTGGGGCATTGAAAAATTGCTAAACAGATGCTTTGTGAAGACTGAATATTTCTCTTTAGGTTTCTGTATTTCATGAATTCTGTGTCAATAGAATTGTAAACTTCAAAGAGTTTTCATCACTCAAAATTAGTCACATTTTTACTGATTACAGAAACATTTTATGTATTACATGCTGTGTAATTTTCAAAGAGCTAGCTGGCATTTTTAAATAATAGTGGAAAGCAAAAACTATTATTTCATAAATTATTAGTATTTAAAATGGTTTACAATTGCAGTTAGATCCATGCCATTTTCTATTTGCGACCTGCTTCATAGTCCTTTCCATATGTTTAATATATCCTCTATCTGTGACCCATCTTACTCTGTCTTTTTATCAGCAACATACAGTTTATTTATCAATAACCATAGGCATCCCCTATATATGTCCATAAAATATGAGTGCTGGCATTTCCATTTTTAAACACAGCAGAATGACTTTCTTTTTCTGTCACTATTGCTGTTCGTGACGTATGAAG
Seq C2 exon
CATTTTGGTGACACAATTCAGGGAGAAATCCAGAGGAGAAAGACAACTTCCTATCAAGAAATAAAGAGAACCACAAGCCCACAGAATCATCTTTAGATGAGAAGGTGGCTCCCTCCAAGGCATCCCAAACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079293-Clec7a:NM_020008:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=NA C2=0.884
Domain overlap (PFAM):
C1:
PF083915=Ly49=PU(49.2=83.8)
A:
NA
C2:
PF083915=Ly49=PD(49.2=72.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCAGGCTCCATCTTCAC
R:
GTAGTTTGGGATGCCTTGGAGG
Band lengths:
232-2127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: