HsaINT0036282 @ hg19

Intron Retention

Gene

ENSG00000172243 | CLEC7A

Description

C-type lectin domain family 7, member A [Source:HGNC Symbol;Acc:14558]

Coordinates

chr12:10279170-10280444:-

Coord C1 exon

chr12:10280346-10280444

Coord A exon

chr12:10279308-10280345

Coord C2 exon

chr12:10279170-10279307

Length

1038 bp

Sequences

Splice sites

5' ss Seq

TGGGTGAGT

5' ss Score

8.73

3' ss Seq

ATTATTGTTGGTATGTGAAGCTA

3' ss Score

1.12

Exon sequences

Seq C1 exon

GATCGTGTGCTGCATCTCCTCCTTGGCGCCTCATTGCTGTAATTTTGGGAATCCTATGCTTGGTAATACTGGTGATAGCTGTGGTCCTGGGTACCATGG

Seq A exon

GTGAGTATTTGGTGGAGGAGATTAACAACAGACAATTTAGTAAGCAATTATTATGTGCCAGGCACTCTTTTAAGGGCTTGACATGCATAATCTACTTTAATTTGTATATAATCTGGTTTTATCTGTATTGGGTTGGTGCTGTTAATGCCCATTTCACTTATAAAGGGTGTGAGAGACTGAGAGGTTATTTTACCTTTCCAGGGTTATAAGCTAGTTAGTGGTGGGACCATGATTAGAAATTTGGGTGATCTGTCTAAAAAACTCATACTCTTAACTACATTGCTCTCCTACCTCCCTTACATAGCTGGTTTCAAAGCTGTGGAATTCAAAGGATAAATTAATGAAGAAAACAAGCGGAGCTGAAGAAGAAAGTACAATATGGTGCTGTCTTCCTAATGAAATAAATTCACTAAATGGACATTAAGCTATTTTTATGATTCACATTATTTAAGGAAATTATTTCCGATCTTTAATATAAACACCTTTGAATACACCAGAAATTTCCTGAGGCACTTGGTCTTAAGTCGATATTTTGTAATGGATTAATATTTTTTTTACATTTTATATCACATGCAATCTGTTGTCAGTCACCTTCAGAGAGTCTTCATGACATTCCTTAATTAGTCAAATGTTTATTGAGTGCGTTCTATGTTATAGGTACTGGGCAGTTTCTCAAGGATCTCTCATTTTTAAATAACAGAAGAAAGGTGAAAGATGTTGCTATTTCAAATCTGTCATGGGTCCAATTGACTCTATGACATTTGCCTCTTGCTGCCTCCCTCATTCTATTTCTTCTTCTCCACCTTCTTTTTTCTTTTCTTTTTTTTTTTTTACTATACCTCCTTTATAAAAGTTATGTATTTCTTTTCATCTATTCTATCAATCGTCTTTATCTCTCCACAGCAATATATCATCTATTTATCATTAATCAATAATGTATTCTTTTATTCCAATAACATTTGGGTTTTGGGATTTTAATTTTCAAACACAGCAGAATGACATTTTTTCTGTCACTATTATTATTGTTGGTATGTGAAG

Seq C2 exon

CTATTTGGAGATCCAATTCAGGAAGCAACACATTGGAGAATGGCTACTTTCTATCAAGAAATAAAGAGAACCACAGTCAACCCACACAATCATCTTTAGAAGACAGTGTGACTCCTACCAAAGCTGTCAAAACCACAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000172243-CLEC7A:NM_197948:2

Average complexity

IR-C

Mappability confidence:

NA

Protein Impact

No protein impact description available

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=NA C2=0.217

Domain overlap (PFAM):

C1:

PF139031=Claudin_2=FE(38.8=100),PF0033515=Tetraspannin=FE(24.6=100),PF0769011=MFS_1=FE(28.9=100),PF083915=Ly49=PU(36.8=82.4),PF059667=Chordopox_A33R=PU(20.5=73.5)

A:

NA

C2:

PF139031=Claudin_2=PD(22.4=40.4),PF0033515=Tetraspannin=FE(34.3=100),PF0769011=MFS_1=FE(40.4=100),PF083915=Ly49=FE(60.5=100),PF059667=Chordopox_A33R=FE(37.7=100)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSP00000302569