BtaINT0039394 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007304 | CLK3
Description
Bos taurus CDC-like kinase 3 (CLK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001034248]
Coordinates
chr21:34448306-34452116:-
Coord C1 exon
chr21:34452044-34452116
Coord A exon
chr21:34448458-34452043
Coord C2 exon
chr21:34448306-34448457
Length
3586 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
TTTCTGTTTCTGCGGCCTAGATG
3' ss Score
6.89
Exon sequences
Seq C1 exon
GGCCTAGCAGCAGCCTGAGCCTGGGAGACCGTGAGTGTGGGGCCCGGGCCCGCGACGGGAGCAGTGGCGGGCG
Seq A exon
GTGAGTCGGCGGGGAGGGCGCGCTATGTGTGGGTCCCGGGGCTCTTTGTTCGGTCTCGGGCTACCCCCTTTCGTTTTCTTCTCGGCCTACCTCAGGCCGCGGCCCCGACCTCTCACCCCTGACCCGCCGCTTCTTCCCCAGAGGGCGATTACCACAGACCCCGACCGCTCGCTCCCGCGTGTCGGCGTCAGAGTATGAGAGGCCTCTGAGGCCCCTGCAGAGATCCATCCAGTTTTGGCCCTGTAGCCTGCCCGCGGAATGGGGTCGGGGCCCTACCTGGGATACCCTGGAGGGGCTTTCAGACCCTCCCCTCCCCCTGGCTCGAGGCTTAGTTCTCAGACACCTTCCCCGCGCGGCTTGGAGTTTGATTCCGGCCCAAGCTGGCCTGCCTCCCCCGCCCCCCCACCCGCCCACCCCAGGTCTCCCCTCGCCTCCACTGGCGGCGGTTACGGGGGACGGGGCTCTGAGATCTCTGGGACCCGAGCGACAGGAAGGGACACGAGCGAGGGCCGCAGGCCCCCTGCTTGTTTTGTTGTGATGGATCCGCTCCAGCCCTGAGGAGGGGCCAGGCCAAGCTGACAGTACAAATGCCCGGGCTGTTCCTCGCTCCGGGAGTCTCTGTGCTTTAGTTCCGGGTGCGGGTGTCCTGGCGTGGGGGCTGGGGTGGGAATCTCCTGAGCCAGGGCTCCGTCGAAGCGGAGTTGGCAGCCTTCCAGCTTCCCTCCTCCATGCCCTTGAAAAGGAGGAGCGTTTCACCCGGTGGTGGCGGCTTGCAAGGTGGCAGGTTTGAGGTTGCAGTGGTGGGGCAGCGTCAGCCAAAAATAACCGTGGGGCGTTGGGGTGGCAGGGATCCGGGAGGGCAGCCGCTGACCTGGCTGGCTGCTCTTCTTGTCAGCCCAGTTCTCTGGCCAGGAGCAGCAAATGAGATGTAAGCCTGTGCTCAGAAGAAAGCTGGCATCCTCTGCCTGGTTTTCTTCGCGTTACCTTTTTCTTCATTGTGCAGAGCAGAGCCTTCCAGAGCGTAATTGTGGCCCTTACCTTTTAACAACCTGTTTGCAGAGGTCTAAGAATTAGAGATAATTGATGAGAAATGGGCCCTAGAGCCCTAGCTGGAAATAATGAGCATCTGGTATTTCCGACATTTCAGCTGCCTAGAATGTGTTAAAGGGAGTTATATTCTCTATGATTGCCTTGTGTGTGCTGTTTTATATAGCTCTTATACTTGTCCTCTCCTTTGCCAAGTTGGCCGGGAGGTCGTGTTATCTCCATTTTCCAGATACGGTAACCAAGGCCCAGAGTGACTTGTAAAAGGTTAGGAGACCAGTAAGCACCAGCACTGGGATTTTGTTCAGGGTTTTCTACCCAGAGCTCTCTCCCCCCTGGTTCCTTGGAAGGGACTTTTAAAATGTCCTTAGGTGGTGCTAATGGTAAAGAACCTGCCTGCCAATGCAGGAGATGTAAGAGATGCAGGTTCCATCCCTGGGTCGAGAAGATCCTCTGGAGGAGGGTATGGCAACCACTCCAGTATTCTTGCCTGGAGAATCCCATGGGCAGAGCAGCCTGGCAAGCTACAGCCCATAGGGTCACAGAGTCAGACATGACTGAATTGACTTAGCATGCACACATGCAATGCTCTTAAGGCATTTAACACAGACCCAGAGGTGTTACCTGGGACCTTTTTAACGTTGTTAGTGAAAAGCTGCCTTCAGTACATCTTGTGAACCCAGACCTGTGCTAGGCATTTGACCTTAAGGCATGTACTAGGCATGTTACTTACAAGATGGCATAATTTAATCCTCACAGAGCTATCCCCATGTTGCAAGAGGAAGCTGAAGGTTGGAGTTGTTTAATAACTTGCCTAAAGGCACAAGCTGGAAATGGCAGTGCCAGGATTCAGATTGACTTCTCTCTGACTTTGAAGCTGTGCTGTTTCCATTAACAGGACCATGTCTGTACATGAATCTTGTAGGTCCCAGGAGGGAGTCTTTGGCCTGTTGTGAGCTAGACCAGGTCTTCCAGGTCTGATGCTTTGCCCAGTGCGGATGGGCAGTGCCTTTGTTCTGGTCACTGGAGCATCTTCCGTGTCACTTAGTGAGATGTGAGATACTGCCTTCATTCCATTACTTGGGGACCTGACCCAGCCATAATGGCAGGGAAACAGTGAAACATTAATCTGCTCATCACCAAAACAGAACTGCAGTCTGAGCTCTTGAGCTGTTGCAAAATATTTATCCCCAAGGGTTGCTGGGGCCTAGACTTTCAGATAGAGGGTAGAAGACAGCCGCTAGCCAGGAGACTGAGGGCAGTGACTTTCTTGGGGTCCCAGGAAAGCTCCCAGGTGTTTTGTCAGATATGCTTTGGTGACCTGCTCATTCAAGGAGAGCTGTTTCATCCTTTTCTTCTCCAGAGATGGGGCAGCCTCAATGGATTTGTCAAAAATGTGCTTCATCAGGCAAGCCCAAGACTGACCACCATTGGTTGGCTATGGCCAAGTGAAGGATTGGGAGGGAGGCTGGCTATAGTCTCTGACCGAGCCCTCCCAAGGAGGCAGTGTCAGGTTTTGGGTGGAACAGGGAGCTGGCCTCACATAGCACATGGCTGAACCAACCTGGCAATTTCCCGTGGTGAACGTAAATTCCCACTGAACTAGGAATAGTGAGGTGGGGCCCTTTTGGCCTGCCTCTGTGAACACAGAGCCTGCCAGACAGACAGCCTTCTGGCTCCTTCTGAGATGGGCACAGAAGAGGGTACTGGAGCAGGGGATTTAGAAGAGGGAACAGTAATGGTCCTGTTGCGGGTGAGGCACTGCCTGGGCATGGCACCAGTGGCAGGTGGTCTAAGAGTGCGAAATAGGCCTCAGGCAACTAACTTGGTTGCTCTGAAGATGCCTGGCATCTTTACTGATTCTGAGACTGAATTTAGACCAACAAGGGCTGGATAGACCCCCATGTCTGCTTGACCAGACCCTCAAGTGTGCTCGGGAATGTTTTGGGGCCCCTCTTTGTCCGAGGGCTAGTCTGCTCATTTCTGCCTGTGGTTCCTCACACTGATTTGTGGTCCTTACTCCGTTGAGTGGGGTACAATTCAGGGCCTCAACCAGGCAACTTGGCTTCTCAAACTCGAGGTCTTTCTCCCCTTGTTCCTGCGTGTTGGCTCCCTGCCAGCAGCCTTTTGACTCTGACCTCTGGCTCAACAGACCAGGCCCTTCCTAGGACCCTACAGACGAGCAGGAGGGAGCTGAGCACAAGAGGCTCCCTTTCTTCCTGGGGGTCTTCCGTGGTGGTGCTCACCAGCCCCTTCCTGCATTCGGCCTCAACACCGGTCCTGGCTCACCTGGTTCCCTGAGTGCTCAGGCCACCAGGCCAAAGCTGTGCTGGGGAGGCAGCTGTTTGTTTGTTCACCAGCAGAGAAGGGTGTTACCCATTGTCTGCTGTTTGACCAGTGTGACCTCAGAGTTCTTCATCACTTCATAAACCCCTGGGAGGGGCTGCCCCCAAACAGAACAATGGGCCTCTTCTTCAGGAGCACTGAGGCAGCCCAGTGGCTGGCTGCATGTTCAGCAGGGCTTTCTGTTTCTGCGGCCTAG
Seq C2 exon
ATGCATCACTGTAAGCGATACCGCTCCCCTGAGCCAGACCCGTACCTGAGCTACCGATGGAAGAGGAGGAGGTCTTACAGTCGGGAGCACGAAGGGAGATTGCGATACCCGTCTCGAAGGGAGCCGCCGCCACGGAGATCTCGGTCTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007304:ENSBTAT00000009609:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.608
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]