RnoINT0037389 @ rn6
Intron Retention
Gene
ENSRNOG00000030126 | Clk3
Description
CDC-like kinase 3 [Source:RGD Symbol;Acc:621259]
Coordinates
chr8:62538859-62541959:-
Coord C1 exon
chr8:62541912-62541959
Coord A exon
chr8:62539011-62541911
Coord C2 exon
chr8:62538859-62539010
Length
2901 bp
Sequences
Splice sites
5' ss Seq
CGGGTGCGG
5' ss Score
6.49
3' ss Seq
TTCTCTTTTTTGTGGCCTAGATG
3' ss Score
7.73
Exon sequences
Seq C1 exon
CCAGGCTGCTCCTCGGTCCGGTCGGGAGCCTCTATGCTTTAGTTCCGG
Seq A exon
GTGCGGGCTCCCTGATGCTTGGGTGGGAATTGCCTGAGTCTAGCCCCCATCAAGGCGGAGTTGGCGGCTTTCCAGTTTCCCTCCTCCGTGCCCTTGAAAAGGAGGAGCGTTTTGCCCGGTGGCAGCCGCAGCTTGCGAGGTGGCAGGTTTGAGGTTGCAGTGGTGGGGCACTGCCAGCCAAAAATAACCATGGGTCGCTTGGGTGGCAGGAATCCGGGAGGGCAGCCGCTGACCTGGCTGGCTGCTCTTCTTGTTAGCCCGGTTCTCTAGCCAGGAACAGCAAATGAGAAGCCAGAGAGGCCTGTGCTCAGAGAAAAGCTGGCATCTTTAGCTTAGTTTCATTGGTCACATTACCTTTTTCTTTACTGTGCAGAGCAGAGCTTCCCAAAGCATAATTGTGGTCCTTAAGTTTTAAAATAGCTTTTCTGCTGAGGTCTCAGGAAACCAGGGAATTTTCGAGAAATAGGCTCAAAAGACCTGGCTGGGAGCATGACGTGGGCCACCTGGTATTTCCCATTTTTCACCTGCCTTGGATGCGTTGCAAGGGAGATGATCTCTATTACTGCCTATGTGTGGTACTTCATGGCCAAAATACTTGGCCATCTTTGCCCATCTAAAAGGTGTTATCTTTATTTTTCAGGCATGACAACTGAGGTCTAGAGTGACTTGTATAAGGCCACAGGGCCAGTAAGTGGCAGCACTGGGATCAAGTTCAAGGTTTCCTGCCAAAACTTCCTACCCGGTCTCTTGGAAGGAAGGAATTATAAATTAAGGCATTCAGCATATCCCTGAGTGTTAGCCGGCATCTTCTCAGTGCTAATGAAAGGCTGTCTTTAGTACTTCTTGTGGCCCAAACCTGTGCTAGGCTTTTACTTTATAGGGCAGACATATTTAATTCTTACGGAGCCTGTAAGAGATTATTGTTCCCTTGTTTCAAGAGGAGGCCGAAGCTCAAAATGGTTTAATAACTTGCCCAAAGGCAAACAGTGAGGTGGTAGTGCTGTGGATCAGGTTGACTTTCAACTCTGAAGCTGTGACTTTCCACTCAAGTAGACATATGTGGTCATAGAATCTATCTAGGTCTCAGAAGGAAAATTTTGGCCTGCTGTAGATTAGATCACATTACCACATTCTCCAGATAGGATTCCTGCTTAGAGTGCTCCGTCTGCCTGGTGAAGATGGGCAGGACCATTTGCCTTTTGGGAAGATGTGTGCCCTGGCCAGTAGGATGTCTTTTGGGTCAATTAGTGAGACGTGACATACTGCTTTCAGACCATAGCTTGAGCACCTGCCATAAGATAATGGGGGTGGGGGTGGGAACATTCAGATGATTGTGAAAACAAGTCTTCTGATTTTATATAGTGTTTATCACCAAGGATTTCTGGTTCCCTAGACTTTTCAGATGGTGGGTTGTTAGTGGGAAGATAGATGGCAGTGTCTTTCTTAGGGTTCCCAGAGGCTCCCAGAGGTTTAGATAAATTGCCTCCCTATCCTGCTCATACACAAGTACCTATTTCATCTTTGGACTGTGCTGGTGAGATTGTGAAAACAAGTCTTCTGATTTTATATAGTGTTTATCACCAAGGATTTCTGGTTCCCTAGACTTTTCAGATGGGGGTTGTTAGTGGGAAGATAGATGGCAGTGTCTTTCTTAGGGTTCCCAGAGGCTCCCAGAGGTTTAGATAAATTGCCTCCCTATCCTGCTCATACACAAGTACCTATTTCATCTTTGGACTGTGCTGGTGAGATGGAGCAGCCTTGATGGATTTGTTTAAAAGGTGCTTGGCCGGGCAAGCCTAGGACTACGCACTACTAGGAGGTTGGGTGTGAGCGATTGAAGGCTTGGAAAGCAAACAAGCTGTGCTCTCATGCCTGGCCATCTGGTGGAGAGAATGAGAAGGGGTTGGATATGGGTGAAAACAGTGCCAGACTCATGTAGCCATCTCTGTCAATGGTTGCCGAACCCACTTGGGAGTCTCCTGTATTGGATCTAAGTGCTCAGTGGCTAAGGAATACTTGTCCTACTTCCCAATGTACAGCCACGTCTTGGCTCCTCCAGAGATAGGGCAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGTGTGCTGGAGTGGGAGCTAGAGGGATGGCAGTGATGCTGTTAGTGAAAGGTGAAACACCTGGTATGGGACTCTAGTTGGTCTGAGGGCCACTAGGATGTGCCTCCGGCAAGAAGCTTAGAGTCCCTGAGGATTGTGGCACCTTTCTGGGCTGAGACTGGACGGGTCAGTAAGAACTGGGCAGGCCTTCTGGGCCCAGGCCCACTTGGCTGGAACCTGGCAGAGGTAGGGAATATCGGTGAGACATTGTATCTTTGCTCAAGGGTCAGAGTTCTCATTTCTACTGTGGTTTCTCACTGACTGAAGAGTTGAATTTCTTTGAGTTGAGTTCAGTTCATTGCTTTAACCAGGCAAGTTTTAGTTTAGTACATTGGGTCTATGCTGTCAGTTCATTAACTTCAGGCTTCTAGAACATTAAGGTTATAGGACTCCATAAGCATGAAGAAATTGAGCAAAAAAGCTCTTTTCCTCCTGTCCTTGACATCTCTGTGACAGTGCTCAGCATCCCACTAGGTCTACTTCTGTGTCCCGGCCCTGATTTACATAGTTCAAATGTTTAGACCTCTAGGCCATGCTGGATAGGTGCCTGTTTGTTTATTCACTGGCAAAGGAAGGAGTCATTGTCGGCTGTTCTGTCACTGTGACCTCAGAGTTCTTCTTTACTTCATAAACCCCTGGGAGGGGCTGCCCCTAAACAGAACAATGGGCCTCTTCTTCAGGAACACCTGGCTGCATCAGGCCGCCCTGTGGCTGGAAGCAGTGAGCTGCGTGTTGAGCAGGGCTTTCTCTTTTTTGTGGCCTAG
Seq C2 exon
ATGCATCACTGTAAGCGATACCGTTCCCCAGAGCCAGACCCATACCTGAGCTACCGCTGGAAGAGGAGGCGGTCTTACAGTCGGGAGCATGAAGGTCGACTACGATACCCATCCCGAAGGGAGCCTCCCCCACGGAGATCAAGGTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030126:ENSRNOT00000068108:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.725
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]