HsaINT0036444 @ hg19
Intron Retention
Gene
ENSG00000179335 | CLK3
Description
CDC-like kinase 3 [Source:HGNC Symbol;Acc:2071]
Coordinates
chr15:74907335-74911689:+
Coord C1 exon
chr15:74907335-74908239
Coord A exon
chr15:74908240-74911537
Coord C2 exon
chr15:74911538-74911689
Length
3298 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
CTCTGTTCCTCGTGGCCTAGATG
3' ss Score
5.63
Exon sequences
Seq C1 exon
AGTTTTCTCATCTGGAAAGTGGGGCCTCGTAATCCTGTCCGACCCGGCGCGGGACAGTAGGTGTCAGGGATTTTGGTGACCCCACGCTCGAGGCCTCTGCAAAAGGGGGCTGTCCAGTGGCCCAGAGACGCAGCCGGCGGGGCTTTTGTCTAGCGGGGGAGTCTTAACTGAGAGGCCACGCAGGCCGGCAGGAAGCCGCTCCACAGGAGGGGGCTCAAGGAGAGGGGATCTCCTCCCTCCAGACTCCGGCCCCGCCAGAGTAGCTCTAGGGTATCTTCCCAGAAACTGCCCCGCACGCACTGGCGAGCTGGGAGCGCCACCACGGCTTTCAAAAAACCCGCACACACCAAGATAATAATGTGTCGTTCGCTCGTTTCGCGCAAGCGGAGTCGCGTCCGCCTTCCCGAGCTCCGGCACACAGACCTCAGGCCGCTCTCGCGCTCTCCGGGGCCCCGAGAACAATGCCCGTCCTCTCCGCGCGCAGGAGGGAGTTGGCGGACCACGCGGGGTCGGGGCGACGGAGCGGGCCCAGCCCCACGGCCAGGTCGGGGCCCCACCTCTCGGCTCTGAGAGCCCAGCCGGCCCGGGCCGCGCACCTGTCAGGTCGGGGGACCTACGTGCGCCGCGACACGGCGGGAGGCGGGCCGGGCCAGGCTCGTCCCCTCGGCCCTCCCGGAACTAGTCTCCTAGGCCGCGGCGCCCGCCGGAGCGGAGAGGGCTGGTGCCCCGGAGCCTTCGAGTCGGGGGCTAGAGCGGCCAGGCCTCCGAGCCGGGTCGAGCCGAGGCTGGCGACGGCTGCGTCACGCGAGGGGGCGGGGCTGCCACGGGCGGAGGTCGCAGCCGGAAGCGGAAGAGGCGCTCGGAGCGGGGAGTGGGGCCTAGCTGCAGCCGGAGCCTGGGAGACG
Seq A exon
GTAAGTGTGGGCTGGGGTCCGCGGCGGCGACAGCGGCGGCGGCGGCCGGGGGTGAGTCGGCGGGGCAGGCGCGCTGGTGCCATTCGGTCTCGGCCTACTCCCTTTCTTTCTCCTCTTCGGCCCATATCGGGCCGCGACCTCTCACCCCTGACCCGCTGCTTCTGCCCCGGAGGGCGGTCACTGCAGACCCTGACCTCGACCCCACGGTGTTGAAGGCGGAGCCTGAACGGCCTCTGGGGCCGCTCAAGGGTCCAGTTTGGGCTCTGTGCCTGCCCGCGGAATGGGGTCGGGGTCCGACGTAGAAGAGCCAGAGAAGCCCTTCAGACCCCTCCCCTACCCCTGGCTTCAGGCTTAGTCCGCAGATGACTCCTCCCTTGGCGGCCTGGAGTTTGATTCTGGCCCAGTCCGGCTTTCCCTCTGTCCCCGGGTCTCCCCTCGGCGCCACTGGTGGCGGTTACAGGGGATGGGACTCTGAGACCCCCTGGGACCTGGGGCGGCAGGAAGGGACGCGAACGAGGGCGCAGGCTCCCCTGTGTGTTTTGTTGTGGTGGTAGAGCCACTCCAGCCCGGAGGATGGGCTAGGCCAAGCTGACAGTTCAAATCCCCTGGCTGCTCCTCCGTCCCGCCCGGGAGTCTCTAGCTTTAGTTCCGGGTGTGGGTGCCCTGATGTGGAGCTGGGGTGGAAATTGCCTGAACCAGGCCCCCATCAGAGGCGGAGTTGGCGGCCTTCCAGCTTCCCTTCTTGATGCCCTTGAAAAGGAGGAGCGTTTCACCGTTGGTGGTGGAGGCTTGCGAGGTGGCAGGTTTGAGGTTGCAGTGGTAGGGCAGTCCAGCCAAAAATAACCATGGGTGCTGGGGTGGCTGGAATCCGGGAGGGCAGCCGCTGACCTGGCTGGCTGCACTTCTAGTCAGCCCAGTTCTCTGGCCAGGAACAGCAAATGAGAAGCCGACAAGGCCTGTGCTCAAAGTTGACATCCTTGGCTTGGTTTTCTTCATATCACCTTTTTCCTCATTGTGCAGAGCAGAGCTTCCCAAAGCATAATTGTGGCCTTTAGCTGCTTTTTAAACAAGCTGTTTGCTGAGGTTTTCGAGAATCAGAGATAATTGAGAAATGGGCCCTAGAGCCCTGGCTGGGAGGATGATATCTGCTATTTCCAATATTTTACTTGCCTAGAATGTGTTAAAGGAAGGATACTCTTCTCTGTTATTGCTTTGTGTGTGGTACCTTATAACTCTCATGCTTGTCATCTCTTTTGCCAGGCTGAGAGATGTTATCTCCATTTTCCAGGCATGCTAACCAAGGCCTAGAGTGACTTGTCTAAGGTCATGAGGCTGGTATGTGACAGCACTAGGATTTAGTTTAGTTTTCTGCCAGAGCTCTTGCCTCCCAGTTTCCTTGGAAGGGACTTATAAAATGTCTGTAAGGCATTTAACACAGCCCTGAAGTGTTACCTGGAACTTTCAGATGTTCATGAAAAGCTGCCACTAGTACCTCTGTGGGCACAAAGCTGTGCTAGGCATTTCACTTATAGGAGAGAGATATTTAATCCTCACAGAACCTTGTAAGAGATTACTATTCCCTTGTTGCAAGATGAAGCTGACGGTCAGAGTAGTGTAATAATTTGTTCAAAGGCACACAGCTAGAAGTGGCAAGCCATGATTCAGATTGACATCTATATGACTCTGAAATTTTGTTTTCCATTGATGTGAATATGTATGGACATAAGAATCTTCTAGGTCCCAGGAGGTAGTCTTTGGCGTGGTGTGACTGTGACTGTGTCCTCCAGCTCTGGTGTTTGTCTGCCCAGTGAGGATGGGCAGGACCATACTTGCCTTGTGGCACGACATGTGCCCTGGCCAATAGAGCATCTTCTGGGTCAATTAGTGGGGTGTGAGTTCCTGCTTTCATTCCATAGCTTGGGCACCTGACCCAGAGTAATTGCAGGAAAACAGTGAAATATTAGTCAGCTGATTACCAAAACAACAAATCTAAGCTTTTGGGGAGGTGATTTCACAAAATATTTATCTCCAAAGACTTCCCAGGTACACGGGGGAAGACAAGTTAGTGGGGAGATGGAGGGCTTTCTTAGGGACACGGAGAGGCTCCCAGGGGTTTGGTCACATAGGCCTCACTGTCCTGCTCAAGCATGGGGAGCTGTTCTATGCTGCTTTTCTCCTGACAGACCCTGCTGGTGAGATGGGGCAGCCTCAGTGGGTTTGTACAAAATGTGCTTGGCCAGGCAAGCTCAGGACTGACCATGACTGGAGGTTGGCTGTGGCCAAGTGTGAGTGTTGGGAAGAAGGCTGGCTCCATGGAGGCAGTCAGGGATTGACGTATGGGTGGAGCAGGTTGCTGGCCTCACATGGCCAGCTTTCTCCGCTGGTGGCAGATCCAGCCTGGCAATTTCATTTGGTGGATATAAGTCCTCACTGAACAGGGATAGTGAGGTGGGGCTCTTTTACCTGCCAGATGGCTAACCCTCTGGCTATCCTGGGATAGGCGGAGGGTAGGATACTAGAGCCAGAGAGCTAGAAGAAGGGACAGTAACGGTACTGTTGGATAAAGGCAAGGCACCTGGCAGGGCACTGTGGGGGTCTAAAAGGGTGCTAAATGGGCCTCTGGAAAGAAAGTTAGATGCGCTGGGTCCACGTCCCCTTGGGTTGACCCTCAGGAGGGCTATGGAATGTTTGTGAGGCCTGTGTGCCTCTTTCTCCAAGGGCTGCTCTTCTAGTCTCTTGTGGCTCCTCATGCTCACTTGTGGTCCTTACTCCCTTGAGTGGGGTCCAGTTCAGGGCCCTAGCCAGACAGCGTTCAGCTTCTCAAACTTGAGGGCTTTGAGCCCTCGCCTCCTGTGTACAGCCCTTTGCCTGGCCTTTGGCTTTACAGAGCATTCACTTCACGGGACCGCCCCCCCGGGCGGGAGGGAATAGAGTGCAGGAGGCTCCCCTTTCTCCTGCCTTTGATCTCCCTGTGGTAGTGTTCACCGTCCCCACCCAGGGTTACTGCCTCAGCCCCTGGCCCTGGCTCACCCAGTTCCCTGAGCACCCAGGCCACCAGGCTAGTGATGCTCTGCTGGGAGCTGTTTGTTTGTTCACTGGCAGAGAAAGTTGTTTCCTATTGTCTGCTGTTTGACCAGTGTGACCTCAGAGTTCTTCTTCACTTCATAAACCTCTGGGAGGGGCCGCCTTCAAACAGAACAATGGGCCTCTTCAGGAGCAACCGGGAAGCCCCAGCAGCCCCATGGCTGGAGGTGGCTGGCTGTGTGTTTAGCAGGGCTCTCTGTTCCTCGTGGCCTAG
Seq C2 exon
ATGCATCACTGTAAGCGATACCGCTCCCCTGAACCAGACCCGTACCTGAGCTACCGATGGAAGAGGAGGAGGTCCTACAGTCGGGAACATGAAGGGAGACTGCGATACCCGTCCCGAAGGGAGCCTCCCCCACGAAGATCTCGGTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179335-CLK3:NM_001130028:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.905 A=NA C2=0.703
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)