MmuINT0037422 @ mm10
Intron Retention
Gene
ENSMUSG00000032316 | Clk3
Description
CDC-like kinase 3 [Source:MGI Symbol;Acc:MGI:1098670]
Coordinates
chr9:57761716-57765860:-
Coord C1 exon
chr9:57765074-57765860
Coord A exon
chr9:57761868-57765073
Coord C2 exon
chr9:57761716-57761867
Length
3206 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
TTCTCTTTCTTGTGGCCTAGATG
3' ss Score
8.01
Exon sequences
Seq C1 exon
GGGCTGAGTGACTCGAGTGGCAGAGCGGGAGCGCGGCGCGGCTCGGGGCTTTTGTGTGGCGCGGGTTTCCTAGCAAGACTGACAGCAAGACGCTCTGAGGTGTTCAAGGGAAGGGGACGATTTCTCCGTCAGACCCCACCGCCGAGGCTCGCGGGGATCTTCCCGGAGACTGCTCGCTCGAGCCAGCTGGGGCGTGGCACCAGGACTTTCAAAAAACCCGCACAAGCCGAGAGCAGAATGTGTCGTTTGCTTCTTGCGCGCAAGCGGAGTCGCGCCCGCCTTCCTCTGCCCGGGCGCACCGACCGCCTTCGTCTCTAGCGCCCTCCCGGGCCCCGGGAGAACAATGCCGGTCCTCTCCGCGCGCAGGAAGAGGCTGGCGAGCACAGCTGGGCCGCGGCGGGGAAGCGGCCCCAGCCTGGCAGTCCGGTGGGTTCCTCCTTTAGGCCCAGAGCCGTCCTCAGACCGTGGTCGCGCACCGATGCGGCCTCGGGGGCCTACGTGCAGCACCACACGGAGAGGGGCAGGCCGCGGCCCGAGGCTGCTCCCGGGACCTCCGGGAAGAGACCTCCACCGATGTCGCCCGGACCCTGGCGGGGCAGGCCAGTCCCCCAGAGTCTGCGAGTTCGGGGCTAGAGCGGTCAGGCCTCTGGGCCGGGTCGAGCCCGGGCCGCCGACGGCTGCGTCACGCGAGGGGGCGGTGCTGCCACGGGCGGAGGCCAGAGCCGGAAGCGGAAGAGGCGCTCGGAGTGGGGAGTGGGGCCTAGCCGCAGCCGGAGCCTGGGAGACG
Seq A exon
GTGAGTGTGGGCCCGAGCCCGTGGCCGGGCAGCTGGGGTGAGTCGGTGGGGACGGCCACGCCGGTACGGGTACCGTGCCACCCGGTCGGGTCTCGGCTTGGACCTATTTCCCTCTTCGGCCCACGTCAGGCCGCGGTCCCGACCTCTCACCCCTGACCCGCCGCTTCTCTCCCTGAGGGCGGTCACTGCAGACCCCTTTTCTGGTTCCCGCGGTGTTGGAGGCGGAGCTCCAGCGGCCTCGGAGCCGGCTGGGAGGCTTCCCTTTGGGTCCCGCGCCGGCCCGCTGGCTGGGTCGCGTCCGACCTAGGCTATCCTGGAAAGGCTTTCCCTGCCCCGAGCTCGAGGCTTAGCCCGCAGATCTCCTTCGCGCGCCGCCTGGAGTTTGATTCTGGCCCAGGCTGGCCATCCCTTTGGTCGCCGGGTCTTCCCTTGGCGGTTACGGGGAACGGGGCTCTGAGATCCCTGGGATTCGGGCAGAAGGAAGGGACTCGAGTGCGGGCCGCCGGCCCCCTCCGTGTTTTGTTATGATGGAACCGCTCCATCCCGGAGAATGGGCCAGACCAAGCCAGGAGTACAAATGTCCAGGCTGCTCCTCGGTCCGGTCGGGAGCCTCTATGCTTTAGTTCCGGGTGCGGGTGCCCTGATGCTTGGGTGGGAATTGCCAGAGTCTAGCCCCCATCAAGGCGGAGTTGGCGGCCTTCCAGTTTCCCTCCTCCGTGCCCTTGAAAAGGAGGAGCGTTTTTGCCCGGTGGCAGCCGCAGATTGCGAGGTGGCAGGTTTGAGGTTGCAGTGGTGGGGCACTGCCAGCCAAAAATAACCATGGGTCGCTTGGGTGGCAGGAATCCGGGAGGGCAGCCGCTGACCTGGCTGGCTGCTCTTCTTGTTAGCCCGGTTCTCTAGCCAGGAACAGCAAATGAGAAGCCAGAGAGGCCTGTGCTCATAGAAAAATTGGCATCCAGTAACTTGGTCTCATTGGTCACATTGCCTTTTTCTTCATTGTTCAGAGCAGAGCCTCCCAAAGCATAATTGTGGCCTTTACGTTTTAAAAAGCTTCTTTGCCGAGGACTCATGGAATCGGAGAATTTGTGAGAAATAGGCTCAAACGACCTGGCTGGGAGGAGGACATGGGCCACCTGGTAGCTCCCATTTTTCACCTGCCTGGGATGCGTTGCAAGGGAGATTATCTCCATTACTGCCTATGTGTGGTACTTCATGGCCAAAATATTGGGCCATCTTTGCCAGTATGAGAGGTGTTATCTTCATTTTTCAGGCATGACAATTTAGGTCTAGAGTGACTTGTATAAGGCCACAGGGCCAGTAAGTGGCAACACTGGGATCGAGTTCAAGGTTTCCTGCCAAAACTTCCTACCCGGTCCCTTGGAAGGAATTATAAATTAAGGCATTCAACATAGCCCTGAGTGTTAGCCGGAACCTTCTCAGTGCTAATGAAAGGCTGTCTTTAGTACTTCTTGTGGCCCAAACCTGTGCTAGGCTTTTGACTTTATAGGGCAGACATTTAATTCCTATGGAGCCTGTAAGAGATTATTGTTCCCTTGTTTCAAGAGGAGGCTGAAGCTTAAAGTGGTTTAATAACTTGCCTAAAGGCAACAGTGAAGTGGTATTGCTGTGGAGCAGGTTGGCATTCGACTCTGAGGCTGTGACTTTCCACTCAAGTAGACATATGTGGTCATAGAAATCCACTTAGGTCCCAGAAGGAAAATTTTGGTCTGCTGTAGATTAGACCGCATTACAACATCCTCCAGATAGGATGCTTAGGGTGCTCTGTCTGCCTGGTGAGGATGGGCAGGACCACTTTGCCTTTTGGGAAGATGTATGCCTGGCCAGTAGGTTGTCTTTTGGGTCAGTTGGTGAGACATGGGCTACTGCTTTCAGGCTACAGCCTGAGCACCTGTCATAAGGTCATGGGGTGGGGGACATTCAGATAAGTGTGAAAACAACAGTGCCTTTCTTAGGGCTCCCAGAGGTTTACATAAATTGCCTCCCAATCCTGCTCATACACAAGTACCTATTTCATCTTTGGACTGTGCTGGTGAGATGGAGCAGCCTTGATGGATTTGTTTAAAAGGTGCTTGGCCAGGCAAGCCTAGGACTATGCACTACTAGAGGTTGGGTGTGAGCAATTGAAGGCTTGGAAAGCAAACAAGCTGTGCTCTCATGCCTGGCCATCTGGTGGACAAAATGTGAAGGGGCTGGATATGGGTGAAAACGGTGCCAGACTCACGTAGCCATCTCTCTGAACTGGCTGCTGATCCCATTTGGGAGTCTCCGGTATTGGATCTAAGTACTCCGTGGTTAAGGAATACTTGTCCTACTTCCCAGTGTAGACCTACAGCCACGTCTTCTTGGCTCCTTCAGAGATAGGGCACAAGAAAGAGTGCCGGAGTAGGAGGAGCTAGAAGGGATGGCTATGATGCTGTTAAAGAGGAAGCACCTGGTATGGGACTCTAGTTGGTCTGAGGGCCACTAAAATTTGCCTCAGGCAAGCAGCTTAGATACCTGATTGTGGCTCCTTTCTGGGCTGATACTCTGGATGGGTCAGCAAGAGCTGGGCAGGCCTTCTGGGCCCAGGCCCACTTGGCTGGAACCTGATAGGAGTAGGGACTATTGGTGAGACATTGTGTCTTTGCTCAAGGGTCAGAGTTCTCATTTCTACTGTGGTTCCTCACTGACTGAAGAGTTTTGAATTTCTTTGAGTTGAGTCCAGTTCATTGCTTTAGCCAGGCAAGTTTCAGTTTAGTACTTTGGCTCTGTGCCACCAGTTCATTAGCTCCAGGCTTCTAGAACATTTAGGTTATAGGATCCCATAGGCATGAAGAAATTGAGCAAAAAACCTCTCCATTCCTCCTGTCCTTGGCATCCCCGTGGCAGTGCTCAGCATCCCACTACATCTACTTCTGTATCTGGGCCCTGGCTTGCATAGTTTGAGTGTTCAGGCCCCTGGGCCAGGCTGGAGAGGCACCTGTTTGTTTATTCACTTGGCAGAGGAGGGAGTCATCCACCCATTGTCTGCTGTTCTGTCACTGTGACATCAGAGTTCTTCTTTACTTCATAAACCCCTGGGAGGGGCTACCCCTAAACAGAACAATGGGCCTCTTCTTCAGGAGCACCTGGCTGCACCAGGCAGCCCTGTGGCTGGAAGCAGTGAGCTGTGTGTTGAGCAGGGCTTTCTCTTTCTTGTGGCCTAG
Seq C2 exon
ATGCATCACTGTAAGCGATACCGTTCCCCAGAGCCAGACCCATACCTGAGCTACCGCTGGAAGAGGAGGCGGTCTTACAGTCGGGAGCATGAAGGTCGACTACGATACCCATCCCGAAGGGAGCCTCCCCCACGGAGATCACGGTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032316:ENSMUST00000065330:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.927 A=NA C2=0.556
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types