BtaINT0039411 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019414 | CLK4
Description
CDC-like kinase 4 [Source:HGNC Symbol;Acc:HGNC:13659]
Coordinates
chr7:41112617-41113177:-
Coord C1 exon
chr7:41113087-41113177
Coord A exon
chr7:41112684-41113086
Coord C2 exon
chr7:41112617-41112683
Length
403 bp
Sequences
Splice sites
5' ss Seq
GATGTATAG
5' ss Score
-2.49
3' ss Seq
TTCTCCCCCCCTCACTTTAGATG
3' ss Score
10.12
Exon sequences
Seq C1 exon
AAGAGCCACCGAAGGAAAAGATCCAGGAGTATAGAGGATGATGAGGAGGGTCACCTGATCTGTCAAAGTGGAGACGTTCTAAGAGCAAGAT
Seq A exon
GTATAGAATATTTTTCAACACTTTTTAAACTTTGCAGACAGAATAATCTTTTTAAGAATAGTTTGTCAGCGGGGGGCTAAAGAACTCTTCATTGCTTTTTTGTTTTGTTTTTCGTGGGTTTGTTTGTTGTTCTTTTGTATTTCTTCTTTTCTATAGAGTTTAAATATTTCTACTCTACTAAAGTTCCAAAATAATCAGTGGAATTTGAGATTAGAGCAAGAAAGATAGCTCTGTCTGAATTGTTTTTGTAACAGCTGAAAATAAAATAATTTTGAGTGCTGAAACCTTAGTTATGCTTTGATAGAGATCATTTGAAAATATTCCACACTTAAGCTTTCATTGTTTGAATAACTGATACTTTGTGCTCAGGTACTTATACTTCTTTCTCCCCCCCTCACTTTAG
Seq C2 exon
ATGAAATCGTGGATACTTTGGGTGAAGGGGCCTTTGGCAAAGTTGTAGAATGCATTGATCATGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019414:ENSBTAT00000025863:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.323 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(0.1=0.0)
A:
NA
C2:
PF0006920=Pkinase=PU(6.9=95.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]