HsaINT0036463 @ hg19
Intron Retention
Gene
ENSG00000113240 | CLK4
Description
CDC-like kinase 4 [Source:HGNC Symbol;Acc:13659]
Coordinates
chr5:178043883-178044435:-
Coord C1 exon
chr5:178044345-178044435
Coord A exon
chr5:178043950-178044344
Coord C2 exon
chr5:178043883-178043949
Length
395 bp
Sequences
Splice sites
5' ss Seq
GATGTATAG
5' ss Score
-2.49
3' ss Seq
TTTTTCCCTCCTCACTCTAGATG
3' ss Score
11.28
Exon sequences
Seq C1 exon
AAGAGCCACCGAAGGAAAAGATCCAGGAGTATAGAGGATGATGAGGAGGGTCACCTGATCTGTCAAAGTGGAGACGTTCTAAGAGCAAGAT
Seq A exon
GTATAGAATATTTTTCAACACTTTTTAAACTTTGCAGAAAGAATAATCTTTTTAAGAATAGTTTGTCAGCGGGGGGCTAAAGAACTCTTCATTGCTTTTTTATTTTGCTTTTTGTGGGTTTGTTTGTTCTTTTATATTTCTTCTTTTCTGTAGAATTTAAATATTTCTATTCTAAAGTTCCAAAATAATCAGTGGAATTTGAGATTAGAGCAAGAAAGATAGCTCTATCTAATTGTTTTTGTAGCAGCTGAAACTAAAATAATTTGAGTGCTGAAACCTTAGTTATGCTTTGTTAGAGATCATTTGAAAATATTCCACACTTAAGCATTCATTGTTTGAAGAACTAGACAGTTTGTACTCAGGTACTTACACCTCTTTTTCCCTCCTCACTCTAG
Seq C2 exon
ATGAAATCGTGGACACTTTGGGTGAAGGAGCCTTTGGCAAAGTTGTAGAGTGCATTGATCATGGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000113240-CLK4:NM_020666:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.323 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(0.1=0.0)
A:
NA
C2:
PF0006920=Pkinase=PU(6.9=95.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)