GgaINT0017801 @ galGal3
Intron Retention
Gene
ENSGALG00000006057 | CLK4
Description
NA
Coordinates
chr13:14305175-14305735:+
Coord C1 exon
chr13:14305175-14305265
Coord A exon
chr13:14305266-14305668
Coord C2 exon
chr13:14305669-14305735
Length
403 bp
Sequences
Splice sites
5' ss Seq
GATGTATAG
5' ss Score
-2.49
3' ss Seq
CTTTGGTTTGTTCTTTTTAGATG
3' ss Score
10.1
Exon sequences
Seq C1 exon
AAGAGTCACCGAAGGAAAAGATCCAGGAGTGTAGAGGATGATGAGGAGGGTCACCTGATCTGTGAAAGTGGAGACGTTCTAAGAGCAAGAT
Seq A exon
GTATAGAACATTTTTCAACACTTTTTTTAAAAACTTTTCAGCAAAAAGTCTGTTTAGAATAGTATGGCAGAGGAGGGGGGCTAAGGAAATCTTCATTACTCTTTTTGTTCTGTTTTTTTTTCGTGCTTTTGTTTTTTTGCATATCTTCTTTTCTGTAGAGTTTAAGTACTGTATTCAAAAAGTTGCAAGTAGTAAATGAACTTGAGTTTTGAGATTAGAGCAAGAGATAGGGTTTTTTTTGGCTAACTGTTTTCATGACGCCTGTCCAATAAAATAACACGTTCTGTTGCTGAGATTTAAAGTAATTATGCTTTTTGTAATGGCACATTTTAAAATCTACATTAGTAATATTCATTCTTACCTAAGTAGTTACATAATTCTGACTTTGGTTTGTTCTTTTTAG
Seq C2 exon
ATGAAATTGTTGCGACTTTAGGAGAAGGCGCTTTTGGAAAAGTGGTGGAGTGCATAGATCATGATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006057:ENSGALT00000009766:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.484 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(0.1=0.0)
A:
NA
C2:
PF0006920=Pkinase=PU(7.0=95.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]