BtaINT0039833 @ bosTau6
Intron Retention
Gene
ENSBTAG00000046512 | CMYA1
Description
Bos taurus xin actin-binding repeat containing 1 (XIRP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001245928]
Coordinates
chr22:12549676-12558895:-
Coord C1 exon
chr22:12558757-12558895
Coord A exon
chr22:12555809-12558756
Coord C2 exon
chr22:12549676-12555808
Length
2948 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TCTCTGCCCCCTCTCTTCAGAAG
3' ss Score
10.63
Exon sequences
Seq C1 exon
ACAGACCCCGAGCTAGGGCAGCGAGAAGGCGTCCGACGGAGCCAGCAGAGTGAGAGCAGCCCAAACAAGAGGAACCGACAGAGCCGCAGGCCTCACCTGCCGAAGACCCCAAACCCCAACAGCCAGGCAGAACCCGCAG
Seq A exon
GTGAGAAACCCACTCCTTTTCTCTCCACACCAATGGGGCTGGTGCTCCAGGCCAGGACCCCCTCTGGCCCCTCTCAGGGCAGCGTGTATTAGTGGAAGCTCTGAGTGAGGGGAGGAAGGTGGGGCCACACACCTGGAGCGGGTGAGTGGAGGGCTCTGATATAAAGATCCTACAAGGAAGTTGCCAGAGAGTTACCGTGAGCCCCATGGTAGCACTCAGAGTGGCTGCCACAGGCCGGAGGCCTACCGAGGGGCAGGTCCCAGCCAGTCTGGCGTAATCCAGAAACAGCCTGGAGGAGGTGGTCTGGAGTTGTGATTTTTAAAATCAGGTACGGAGCTCCTCAGGCTTAAGGCTTTCTTTCCAAGGAGCCCCAGCTAGGCCCAGTGTCTGGACAGAAGAGGTGGGGGAGGACAAGGGGGCCTGACTATGCTGCCAGGACAAGCCCCGTGCCCAGCTGCTGTGGGTAGAAGTCTTGGCATAGCTGGCTCAGGAATGTCTCCCCAGGGCTGGCCTGAGCCCGGCACCCCACATGGCCTAGGGCCTGGGTGTGATGTGGGCCATCAACTTGCCCAGTAGGGAAGCCCTTAAGGAAGATCTGGGGGGTAAAGCTGGGGTGACCAGGTCTGAGTGCTAGAGTATACTGCCCAAGTATAGAGATGTGTGAAGGGGTCTGGGCCAAGAAAGAGCAGACTTGGAGGCAAAAGCGGGGGTCACCCGGAGCGGCTGGCCCAGTCATGGGAGGCCAAGCTCAGGGGCACCCCTAGGGTTCAGGCCTTACCCAAAGTCTGGCACCAGTTCTGAATTCGGCCTTCACCCCGCCTGGTCCCCATCCTTGAGAAACGAGGTGGGAAGACCTTGTAACCGCGTGGTGGAGCCACCAGGGTCAGCTCCTTCCCCTCTGGGGGCCAGTTTCCCCTTCCGAACAATGAGGGGATTGGGCTCAGTGACCTTGGCGGGTCCTCAGCTCTGCCCCCTCTGGACTCTGATTCTGATCACATGTGACCACAGCAGGGATTCTGGAGATTCCTGGGGGAGGCGGTGGAGGTGGGGTGGAGCTGGTGGCCCATACCTGCCATCTGCTCAGGCCACACTGGTGACAGGACAGGGAGGACGTGGGGACCATCAAGGTCCCCTTTGCCTTTGGCAGGGGGTCCTCATGAGAACTCAGGCTAAAGGAAGTGTGTGATGAGACTTGGACTGCCGACTTTAGAGGGCCTACTCCTTGGATGTCTTCAGAGGACAGGCTGGGGTGTGAGTGGGACAAGCAGGGCTTAGTCTCCCCTCTTCTGAGGTAGTTGAGAGACGGAAGCCCTTCCCCCACCCCCAGGTCCCTGTGGCCAGAACACGGTTCTAGCACTGGTCATCCCGCAGCCAGGGGCCAAACGCCAGCTCAGGAGGCAGGATCAGGGAGCCCAGGGCAGAGAAGGAGCCGAGGCGGGTCAGGCTCCCAGGGTCCCACTGGCTGAGCCTGACCTCTCCCCGGCCCAGGGCCGCTGTGTGGAGGCCAGGTCCTTGGCTATATTTAGCACAGAGCGTGGAGCAGAGCTGTGGGTCAGGGGCAGTGAGGGGGGGACGTGCTTCTCATTCTTTCCCTACTGGCCTCTGGGGACTGTTAGCACACCTGTCACGAGACAGATAAGACAGTGAGGCCAGAGGCCAGAGAAGGGCTTGAGCGGTGGGCCAGGGCCGTGGGGGGCAGTGCCTTGGCGGAAGCTGATGGGCATGAAGAGGGAGAAAGAAGGCATGCACAGGAGGTTCGTGCTGCACACAGTTGGGCACGGGGTCCGTGAGCAAGGGGTGAGGCTATCGCTGCAGGAAGGCCCTCAGTCTCACCGCCTCCCCTCCTGGGGTGTCTGCTGGGAAACAGAGGGCCACCACAGCCACTGAGAAAGCGTCACACTTCCTACCTAAAGTGTTTAGAAACCCCGATCCAGCACTGCTTGCGCCTCATTCGCCGAGATCTGACTCTGGACCTCAGTTTCCTCATCTTTAATCAAGACTGGTTGGGCCAGAAGATCCTAGAGGTCCCCCTAGCTCAGAAAACCCCTAGTTAGGATTCAGAATTGAGTTCTGCCTAACTGGGAGACAACTGGTGAACACTCTCTCAGCCTTACTGCTTCTGCTGCAGCTAGAGCTGCCAGCCCCTGCTTTGCCTCCCTGGCCTGAGAACGGAGAGCCAAAAGCTAAAGGCTGGACAGCCCCCAGTGAAAGGGACAAGTGCGCCCTCTGGTGGTGAGAAAGGAAACGTGACTGACAACTATTTGTCTCCATGAGAAATAGTCACCAGTTGGTGTGCTAGTCACTTAGTCGTGTCCATGTCCAAACCTTTGCGATCCCATGGACTGTAGCACGCCAGGCTCCGCTGTCCATGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCAAGCCCTCCTCCAGGGGATCTTCCCAATCCAGGGATCAAACCTAGGTCTCTCTCATTGCAAGCAGATGCTTTACCGTCTGAGCCAACAGGGAAGCCCAGTCACCAGTTTAGGGATCTGCTTCTCCCTGGCTGGGATCCCTTAAATCAGAATTCCCCCAGGCCACTCACCTGGGAGTCTACTAGGGAAAAACTGATTTTGGCAAAAGCAGGCAAGGATGGGACAGGACAGGAACAGTTTTCCCACTGCCGGGTTGGGCACCCCTTAACTGGAAGACGGAGTTTCAAAGCCTGTAGTGCCCTCCTGGCTCTGTGACAACCCAGGTGATTCTGGAGCAGGGACCCACATGATGGATGGCTCCATATGCCTTAAATTCAAAACTAGTCACAGACCAACCACTCAGGTAGCGGGGTGAGACCCCGGGGAGGTCTGGAAAGGGAGAGGGGTGGTTTCTAAGCACATGCCACCTAGGGCTACTCTATGACCAACCCCCACCCCACTGAAATCCCCCAACCCCATCCTCATCTCTGCCCCCTCTCTTCAG
Seq C2 exon
AAGGATGGCCAATGCCCAGACGCAGATGGCCCCCACCCCAACCATCCCGATGGCAGCTACAGAGGACCTGCCCCTCCCTCCACCACCTGCCCTGGAGGATCTACCACCGCCGCCACCCAAGGAGTCCTTCTCCAAGTTCCACCAGCAGCGGCAAGCCAGCGAGCTCCGCCGCCTCTACAAGCACATCCACCCTGAGCTCCGCAAGAATCTGGCTGAGGCCGTGGCCGAAGACTTGGCTGAGGTCCTGGGTTCCGAGGAGCCCACCGAGGGTGATGTCCAATGCATGCGCTGGATCTTTGAGAACTGGCGGCTCGATGCCATTGGGGACCATGAGAAGCCACCTGCCAAGGAGTCCGTGCCTGGTGGCAACGTCCAGGCCACCTCCCGCAAGTTTGAGGAAGGCTCCTTTGCTAATAGTATAAACCAGGAGCCGGCTGGACCTCGGCCATCTGGAGGGGACGTGCGTGCAGCCCGCCAGCTGTTTGAGACAAAGCCGCTGGATGCGCTGACAGTTCGTGCTGAAGCATCAGAGGCTACAGTGAGGGAGCCTGCAGCCAGTGGAGACGTCCAGGGTACCAGGATGCTCTTTGAGACACGGCCACTGGACCGCCTTGGCTCCCGCCCCTCCACCCAGGAGCAGAGCCCCTTGGAGCTGCGCTCAGAGATCCAGGAGCTGAAAGGCGATGTGAAGAAGACAGTGAAGCTATTCCAAACAGAGCCGCTGTGTGCCATCCAGGACTCAGAGGGCGCCATCCACGAGGTCAAGGCCGCCTACCGGGAGGAGATCCAAAGCAACGCAGTGAGGTCTGGCCGTTGGCTCTTCGAGACCAAGCCTCTGGATGCCATCAACCGGGACCCCAGCCAGGTGCGGGTGATCCGGGGGATCTCCCTGGAGGAGGCAGCCCGGCCTGATGTCAGCGCGACTCGCTGGATCTTTGAGACACAGCCCCTGGATGCGATCCGGGAGATCTTAGTGGATGAGCAGGACTTCCAGCCATCCCCGGACCTTATCCCTCCTGGTCCGGATGTTCAGCAGCAGCGGCGTCTGTTTGAGACCCGAGCATTAGACACTCTCAAGGGGGAAGAGGAGGCCGGAGCAGAGGCCCCACCCAAAGAGGCAGTGGTCCCCGGTGACGTCCGCTCCACCCTGTGGCTGTTTGAGACGAAGCCCCTGGACACCCTCAGAGACAATGTCCAAGTGGGTCATCTCCAGCGGGTGGGTCCCCAGGAGGGCGAGAGGTTCACAAACGAGCATCTATCCAATGCTGACCCCTCAGCACCAACCCTCTCTCAGGGTGCCCCCCAGAGGGATGGGGTGAAGGGAGATGTGAAGACCTTCAAGAACCTTTTTGAGACCCTTCCCCTGGACAGTATCGGGCAGGGGGAAGCTTTGGCCCCTGGGAGCATATGCAGAGCAGAAGGAACTGATTCTGCCGGGCAGTCCCAGGACACAGGGTCCCCAGTGTACGCCATGCAGGATGGCAAAGGTCACCTCCATGCCCTGACCTCCGTCAGCAGAGAACAGGTAGTCGGAGGTGACGTGCAGGGTTACAAGTGGATGTTTGAGACACAGCCCCTAGACCGACTAGGCCGAAGCCCCAGTACCGTCGATGTGGTGCGGGGTATCACCCAGCAGGAAGTGGTGGCTGGAGATGTGGGCACTACCCGGTGGCTCTTTGAGACACAGCCCCTGGAGGTAATCCACCAACGGGAGCAGCAGGAACGAGAGGAAGAAGAAGGAAAGCCTCAGGGAGGCCCTCAGCCCGAAATACCCCACAAGGGTGACGTGCAGACCATCCGCTGGTTGTTCGAGACGTGCCCGATGAGTGAGCTGGCCGAGAGGCAGGGGTCAGAGGTCACAGACCTCACAAGCAAGGCACGGTCGTGCACCTGGATGTTCGCGCCCCAATCCCCGGACTGGCCTGAAGGCTCCAAGGAGCAGCACCTTGAGGTGAGCCAGGTCCAGGCTGGGGAAAGACAGACGGAGAGACACGTCTTTGAAACTGAGCCTCTGCAGGCCGCGGGCCACCCCTGCGGAAGGGGGCCCGTGCGGTACTGCAGCAGAGTGGACATCCCCTCGGGGCAGGTGTCTCGTCAGAAGGAGGTTTTCCAGGCTCTGGAGGCAGGCAAGAGAGAAGACCAGGGACCCAGGGAAATCCCTGAGCCCATATCAGCGGGCTCAGTGCACAAGTTCACCTGGCTCTTTGAGAACTGCCCCATGGGCTCCCTGGCAGCTGAGAGCATCCGAGGGGGCAACCTCCAGGAAGAGCAGCCCGTGGGTCCCTCGGGCAAGGGGGTGCCGGAGAGGCAAGAGACTGCGGCCGAGGGGACCCTGCGGACGCTGCATGCCACGCCTGGCGTCCTGCACCATGGAGGCATCCTCATGGAGGCCCGAGGGCCAGGGGAGCTCTGCCTCGCCAGGTACGTGCTCCCATGCCCAGGGCAGGACAGCCCCCATGTTCGGAAGGAGGAGCTGGTGTCTGGGGAACTCCCCAGGATTGTCCGCCAAGTGCTGCGCCGGGCAGACGTGGACCAGCAGGGGCTGCTGGTGCAGGAGGACCCCGCGGGCCAGCTTCACCTCAAGCCGCTGAAGCTGCCAGCGCCAGGCAGCAGCGGGAGCATCGAAGACATGGACCCTGAGTTCCAGCAGTTGCTGGCTTGTGGCCTCGGGACCTCGGCGGGGAGGACGGGGCTGGTGATGCAGGAGACAGAGCGGGGCCTGGTGGCGCTGACCGCCTACTCCCTGCAACCCTGGCTAGCCAGCAGGGCCCCCGAAAGGAGCAGTGTGCAGCTGCTGGCCGGCTGCATAAACAAAGGAGACCTGAGTGGCCTGCACAATCTGCGGTGGGAGCCGCCGGCTGACTCAAGTCCAGTGCCGGCCAGCAAGGGGGCCCAGAAGCTGCCCCCAGCTGAAAGCATCATCCACGTTCCCCCACTGGACCCTGGCAAGGGGATGGGGCATCTGAGAGGGCCGGGGGCCACCCCCTGCGCCCCACAGGCCGCTGGAAAGGCAGTCTCTCTGGCTGGGGAAGAAAAGCAGGAAAGCAGGTGCACTGGGCAGAAAGGGACGGCAGCTTTAGGAAAGTCAGAGGGAGCCATGACTATGCCCCCAGGACCTAGGTTTCCAGCCCTCCAGGTCACTATGCAGAGTCGAAGGACGCCAACAGCCCAAGCCCAAAGCCTGCAGCAGCAAGCTCGGAGCAAGCACAAGCCGGGCCCCACCCCTGGGGCCGCCTCTCTGCCCACCCAGGATGGGCTTCCGCAAGCACCGGCCGCAGGGACTGCCCAGAGCAACAGCAAGCCTCTGGCGGGAGGCAACCCCAGGATCCCAGCAGCCCCCAGCAAGGTCAGTGGGGAACAGAAAGCACTGCCTGGAGGGCTATCTGGGGGGTGGGTGACTATTCAGGATGGCATCTACACTGCTCATCCCGCCAGGACCTTTGACCTACCCGGGGCTGTCTGGCCATCTGGGCAAGGACCCTTTCCACTCCTGGAAGGCCTGGGTCAGAGTCTCGGGCCCGGGCAAGAGGAGCTGGGGGGCCACACACAGAAGGCCTGGGAGCCTCCAGAGAAGGTGATGGCAGGACTCGGCCCAGGGGGCCTCCAAGCTGCAGAGACCACCCTGAAGGCTGCCTTAGCCCACCACACTCGGGCCTCTGAGCCTCGGGCGGCAGGTGCCAGTCTGCACTCTCGTAACGCCTCTGTTCCTCCTCCTCCTCCTCTCCCAGCTTCTGTGACGGGACCGGACTTCCCAGCCCAACCCAGGCATGATGAGAATTCCATCCGGCAGACTTCCAAGCCCACGCAAGACCCCCTTCTCCACTCCCACAACAGCCCTGCTGGCCAGAAAAGCCCTGGGCAGCCACAGACAAAGACCCTGAAACCGGAGCCTCCCACACACCTGAGAAAAAAGCCCCAGCTGCCCCCCAAACCTGCACACTTAAGCCAGCTCCCCCTTCCTCGCTGGCTGTCCAAGCCCGCAGCCCTGGCTCACAGCGCCGCTGAGGAGGGGGGGCAAGGGAAACACAAACAAGGTGAGACTGCTACAGCCAACCACGACCCTCGGCCACACAGGGTCTCCATCGCTGCAGACCAGGGCCGAGTATCTCTACCCCAGGGCCCTGCTGGACAGAGCCAGCCCAGCCCCCAGCATGGCCCCAGCACCGTGGCCCCCAGCCCCACCAAGAGCCAGGCGATAGGCAGCAACAACCACAGCCCTGACCCCCTCAGGCTCTCAGCTCTCAGCAGCCACCCCATCTCACTGCAGCAGGGCCCTAGCCTCACAGGAGAGAAGTGCTCGGACAGTTCCCAGCAAGGGGCCCCCAAGAGCCCTGAGATTCTGCAGGGAGGCCAGCAAGAGCTCCAGGGCCTCCTGAGCCAGGTGCAAGCTCTGGAGAAGGAGGCCGAAAGCACTGTGGACGTGCAGGCGCTGCAGAGGCTCTTTGAGGCTGTGCCCCAGCTACCAGGAGCCCCTCCGGCTCCCGCTACCCCCCACAAGCCTGAGGCCTCGGTGGAGCAGGCCTTTGGGGAGCTGACGAGGGTTAGCACAGAAGTGGCCCGGCTGAAGGAACAGACCCTGGCCAGGCTGCTGGACATCGAGGAGGCTGTGCACAAGGCACTCAGCTCCATGTCTAGCCTCCAGACTGGGACTAACACCAGGGGCCATTCCCAGGGACCCCCAAAGGAACACAGTGCTCAAGAGATCAGTGTCACAGACAGCGGGAGAGTCAGGCCCAACTGCTCAGGCCAGGAGGTCAAAAGTCAAACTCTAGTCAAGAGCCAAACTGAGGTTACAAGCCATACTGAGGTCCAGAGTCAAGCCAAGGTCAGAAATCACTCAGAGGCCGGAAGCCAAGCAGCCCCGGCCACCCCTTCCACCAGGAAGCTGGAGGCCTTGAGAGAAGACTCGCACCTTCCCCAAGCGTTACCTCTCAGCAGGGAGTCACCCTCCTCCCCAACCTTTATCTCCATGGAGTCGGCCACAAGGAAGCTTCCGGAGGAGGCCAGCCCCAGGGGCAACCCTGAGATCTCTGTGAAGAGGGCACATTTCACGCAGGATGAATGCCAGACTCAGCCCCACCAGAAAGATATCTGGCACAAGGCTGGAGAGAAAGAGGCCCCCCAGCTCTCTGGACCGCCACCACCTGGCCCTGCTGCAGCCAGCGCCCTGCCCACCAGGCAGAAGAGTGCTCTGGAGCCGCAGACAGCGCCGGGTGGCTCCCGGCACGATGGAGCCACAGGAGCAGGGACTGAGAGGGTGGGCCAGTGCAGGACCACAGCGCTCGTGTCCCCCACCACGGTCACTGAGCCCGCCGAGCCACCCAGGGGCCCAGGCCCCCACCTCGGGCACCACACTTCCCCCTTGATGAGGCAGTTTCTGCACAGCCAGACTGGGCTCAGCACCGGCCTGGCAGAAGCTGAGATGCTGCGTGTGCCCTGTGGCCACCCCACACCAACTGCGCAGTGAGCCCCTCCATCTGCCACCACAGTCTTCCACCCACCTCCAGGGACCCGGGACGGAGGTGGGTGCTCACCTCCTGCACGCACGGAGAAAGAACCAAAAAGAAAGGGCATGTTCTGAGATCCAGGGGCAGTTTCCCTTTCATCAGTAGCATCCATGGGCCAGGTTCTTGCAAAAGGCAGGGGGGGATGGTAGGGAAGAAGCCCTCCGGAGTAGCCCAAGCCCAGCAACAGAATGGGGGCTTGTGGCTGCTTGTGGAGCATATAATGTGTACAGAAACACACGCTTCTCACACAGGTCTGGCCCGCACGCCAACACAAGTGAGTCTGCATGCCACTGCCTGCGATTGAGCCCCCTGAGCGACCTTCCACTTTTTCAATCTTTATTTCTTTAATACGAGTCAAATGTTCTCAGCCTTCTGCTCTTTAATTCCTAGAGAAGACAGGGCCAGCCGGATTGGTCTCTGTTACATGTTGATGGGCCCCAGAAGGGCCCCGTCATCAGCACCTCCCTCATTCAGCGGGTCATCCTGGCAGCACAAATTTCACACAGACAAAGTCTACGATCACCAATGTCCCTAGAAGCCAAAGATTCTCTCCACCCCCACAGCCTCTCACTTTGTACCCCAAAGAAGAAGGATACAGTCTAATAAACCAAAGTTTTATTCCCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046512:ENSBTAT00000065632:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.8),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]