RnoINT0166116 @ rn6
Intron Retention
Gene
ENSRNOG00000037085 | Xirp1
Description
xin actin-binding repeat containing 1 [Source:NCBI gene;Acc:100910104]
Coordinates
chr8:128704895-128711221:-
Coord C1 exon
chr8:128710958-128711221
Coord A exon
chr8:128708274-128710957
Coord C2 exon
chr8:128704895-128708273
Length
2684 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GCTTCTCCCCTCCTTCCCAGAAG
3' ss Score
8.27
Exon sequences
Seq C1 exon
GTGCACAAAGCCCTGGGTTCACCACATAAAACCAGAAATGGCGTTTCGTGTTGCATGCTTGTAATCTGTCTGGGGGGTGGGGGGTGGAGGCAGGAGGGTCTAGAGTTCAAGGTCATCCTCAACTACTTACGGAGTTCAAGGCCAACCTGGACTGGATGAGAATCTGTCTGAAAAATAAATAAAAAGGCTGATGTGGCTCCTCTTGCTGCAGGGCTTCCTCTCAAGAAACCTGAGATCTCGGGAAAGAGAGAAGAGAGGCAGAAG
Seq A exon
GTAAGGGACCCTGGGTAGCCAGAGCCAGACCATGGCCCGGGGTAAGCCCAGTCCCCAGTCGTTATTGGTCACAGTCTTGGCATAAATGGCCCAGTGTATCCAGGCTAGTGAGCAACTTTCCCTGTGAGGCACCTTGGATGGGATGACTTTGTCCCAGGCCATCTTCTTGCCCCATGGGGGAATCCTCCAACTAAGTCTGAGGTGACTCAGAGAGGAGAGATCCGAATGTGACCAGTGGGCAGGCTGCTGCCGAAGAGGGGTCCGAGGTGGAGGTGGGTGGTCCTGAGTAGTCGGCAGTGCGAAGTCAGTGTCTCAGCACAGGGGACCTAGGCACAGTTTTTGAAACTTACTGTATCCTAAACCTGCCCCCAAACCTGCCTTTACGTGGCGCAGGCCAGATGAGTGTACAGTTGGGAAGGCCAGGAGCCTACAAGCCTGCCTCAGCCTTTTCTGAGACCTCAGCTGAGCCGCCATGGGCAGCCCCTGTCCCTCGATGGGCTTCTGTATCCCCTAACAACAGGCCATTAGATTGGATCATTGGCCTCTGTGGATCCTTGTCTGACCTCTTTGGCCTCTGTGACCCTAGCAAGGATTCTGGAATTCCTGGGAGTCTGGGTTGGGGGCAGCTGGTGATCTGTATAGGAAGTCTGCCCAGGCCTCCCTCATGGTGACCTGATAGAGCAGAAGTGGGGACAGCATGGGTTTGTGTGTGGTCTCCTACTCAGAGCTCAGAGACAAGAGGGACCACCCAGAGGTTTTGCTTGGGGCTCCATAAGGGGATGTCAGATCTTGCTTCCTCTGGACTCTCATATCCTCGATGGGCAGGCCACGGGCAAGCAGCCCTCCCTTCTCCTGCTTCTGAGGTAGGAGGTCAGGAGGATGCCCTTTCTCTTGTCACCAGAGTTCCTGATTCACCACACACCCTCAGGTCCCCAGCTTGACCTACAGGTCAAATAAATACCTTCGCACTTCACAGGAAGCAGAAGGCAGCGTCTTCTAGGAACCCAAAGTATGGAAAGAGATAACATGGGGCATGGGGACACCAGGTCTCCCTGGCTGAGTCGAAACCTCCTTCTGAGTGCCATGATGGCTGGCTGAGGCCCGGACCTCAGCTATATTTAGTGTCAAGTGCAGGGCGGAGCAGTGGGTTGGGGCAGCAAGGGGGGGGGCACATATTTTACATTCTTTCCCTAATGGCCTCTGGGGACTGTCATAACACCTGTCTCAGGACAGATAGGATATATGTGAAACAGACCAGAAGACGACTAGAGGAGTGTGAGGTCTCTGAGGTGTGAGGAGAGTAAGGGAGACGCATGCCTTGGTGGAATCTGGGGCCGGAGAAAGGTCAGGATCTAGACTCTGGCTGGAAGCCCTACCCCAGAAACTTTACAAGCTATGCCTGCTGGCACACAACCGGGGAGGGCACTCTGTGAGCCAGGGCAGGGCCCTCATGTCCAGAGCTGTTTTAGCAGAAGGGACTTCAATCCCACAGTCCTCTACCACACACACACACACACACACACACACACACCCCACACACACACACACACCACACACACACACACACACACCACACACACACACACACCACACACACACACACACACACACACACACACACACACACACACCCTGGATACGACACCACCCTCTGATTCCTCTAGGGATGCAGGACTAGAGGAGTGCATGGCGAATAACAAAGCCCCCCAGCCCCCGCACCCAGTCCTGCTATTTCCTGGGAGCCGGGACTTCCTTAAGGTCTAGGGACTCGAAGTCAGCACAGCCTGTTACTCATTCCAAAAGATCTGACCCCAAAACCTCAGCTTCTTATCTTTAATTGCAGAGAGCTGTGAGGAGAAAAGAACTCAGGAGACAGTCAGTCCAGGACTGGCAAGGTGGCTCAGTTAGGAAAATGCATGCCTAGAATGCATGAAGTTTGAGTCCAAATTCCCAGCAGGAGACCAGTGGCACATTCCAGAAATCTCACACTTGGAAGGTAGAGGCAGTGGGAAGGTCACCCTCAGCTATGCAGAGTTTGAAGCCAGTTGGGGCTACATGTAAAAAGCAAAGCCTGACCTGTTATTCAAACATTGGCCCTGCCTAAACGTGAGCAAGTTTCCCTTTTTGGGCCTCAATTTCGCCAGCAAGGGCTGTGGATCCTGGGGCCTGGGAAAGGTTAGAGGGAGCCAAGAAGTGGAGGTTAGAGAAAGGTTTCTAGTAACCGTGCTAAGCGCGCCCTCTGGTGGTGTAGGGAGGGATTTCACCACTATAGGAAATGTGTCTTCATTTAAGGACACCTTAATTCAGGCATTTCCCAAGACACTTCAGTGCACTCACTTGGGAGTCTGCTGGGGATAGATGATTTTGACAGAGGGAGGCGTGGGTGATTCATCCAGCTTTCCTACTGGGTTTTTGGATCTCTCCAGGGGCTGGAAAGAGTCTCCAGGCCAGCTGTGCCCGGCTTGATCCCAGTGCCCCAGGTGAGACTAGGAAGTGGGGATTCATAGTGATGAATGAATGGACTGTCATATGCCGGCCAAGCAGTGGCAGGGTGAGCCCCATGCTAGAGATCTAGAGATGTGAGGAGCCCCTTGGTAGTGGCCACACACAGTCCCTACCCTTCCTCCTGCTAGTTCACCCAGGAACTGCCCCTCCCTTAACTCAGCTTCTCCCCTCCTTCCCAG
Seq C2 exon
AAGGATGGCCGATGCCCAGATGCAGGTAGTTCATACACCAACCATCCAAATGAGGACTGGAGAGGACCTGCCCCTTCCCCCTCCCTCAGCCCTAGAGGGTCTGCCGCCACCGCCCCCCAAAGAATCTTTCTCCAAGTTCCAGCAGCAGCGGCAAGCCAACGAGCTTCGCCGTCTCTACAAACACATCCACCCTGAGCTTCGGAAGAACCTCGAGGAGGCTGTAGCCGAGGACCTGGCCAAGGTACTCGGTTCGGAGGAGCCCACCGAGGGCGATGTGCAATGTATGCGCTGGATCTTTGAGAACTGGAGTTTGGATGCCATTGGCGACCACGAGAGGCCAGCTGGCAAGGAGCCTGTGTCAGGTGGCAACGTTCAGGCCACCTCTCGGAAGTTTGAGGAAGGCTCCTTTACCAACAGCTCAGATCTGGAGCCAGGACCCCAGCTGTCAGGGGGTGACGTCCGAGCTACCAGACAGCTGTTTGAGACCAAGTCACTGGATGCACTGACAGGCCAGGAAGAGGCAACACAGATGACCATGAAGGAACCTGCAGTCTCTGGAGATGTACAGGGAACCAGAAAACTCTTTGAGACTAAGCCCCTCGACATGCTGGGCTCCTGCCCCTCTATCCAGGACCAGAGCCCTTTAGAGCTGCGCTCAGAGATTCAGGAGCTGAAGGGTGATGTGAAGAAGACGGTGAAGCTGTTTCAGACGGAGCCTCTATGTGCCATCCAGGATGCAGAGGGCGCCATCCATGAAGTCAAGGCTGCCTGTCGGGAGGAGATCCAGAGCAATGCAGTGAGGTCAGCTCGCTGGCTCTTTGAGACCCGACCTCTGGACGCCTTCAACCAGGACCCCAGCCAGGTGAGGGTGATTCGGGGGATCTCCCTCGAGGAGGGAGCCCTGCCCGACGTCAGTGCAACTCGCTGGATCTTCGAGACGCAGCCTCTGGATGCCATTCGTGAGATCTTGGTGGACGAGAAGGACTTCCAGCCATCTCCAGATCTCATCCCTCCTGGTCCAGACGTTCAGCATCAGCGACATCTGTTTGAGACCTGCGCCCTGGACACTCTGAAGGGAGAAAGAGAAACCGAGGCAGAGGCTCCAGCCAAGGAGGAGGTGATTCCTGGTGACGTCCGCTCTACACTCTGGCTGTTTGAAACAAAACCCCTGGATGCTTTCAGAGACCAGGTCCAAGTGGGTCACCTGCAACGGGTGGATCACCAGAAGGGTGAGGGGCCTGTGATAGAGTGTCTGTCCAGTAACGGCACTTCAGCGCTGCCTCTGTCTCAGGGTGTCCCCCAGAACAATGGGCCGAAAGGGGATGTGAAAACCTTCAAGAATCTTTTTGAGACCCTTCCCTTAGACAGCATTGGGCAGGGTGAGCCTTCAGCCTGTGGAAACATAAACAGAGGACAAAGGACTGATTCTACTGGGCTGTCCGAGGGCGCCGATGCCCCCGTATATGCTATGCAGGACAGCAGAGGACAGCTTCATGCCCTGACTTCTGTCAGCAGAGAGCAGGTAGTTGGAGGTGATGTACAAGGCTACAAGTGGATGTTTGAGACACAGCCCCTGGACCGGCTGGGCAGAAGCCCCAGTACCGTGGATGTGGTGCGAGGCATCACCCGGCAAGAAGTGGTGGCTGGGGATGTAGGCACCACTCGGTGGCTCTTTGAGACGCAACCACTGGAGATGATCCACCAACAAGAGCAGCAGAAGCGAGAGGAGGAGGAGGGGAGGGGTCCAGGAGGCCCCCCTCCTGAGCTCCCCCAGAAGGGCGATGTACAAACCATCCGCTGGCTATTTGAGACCTACCCTATGAGCGAGTTGGCAGAGAAGCAGGAATCTGAGGTCACAGGCCCTGTGAGCAAGGCAGAGGCACAGTCATGCACCTGGATGTTTGGGTCCCAATCTCTGAACCAGGCAGAGGGCTCTGGGGAGCAGCACTTGCAAACCAGCCAGGTCCAGGCTGGAGACAGACAGACAGACAGCCATGTCTTTGAGACTGAATCTCTGTCAGCCCAGGGCCAGTCCAGTGGGAGAAAGCCTGTAAGGTACTGCAGCCGAGTGGAGATTCCTTCCGGGCAGGTATCTCGGCAGAAAGAAGTTTTCCAAGCCCTGGAAGCAGGCAAGAGGGGGGTACAGGAGACTGTTTTAAGCCCCGGATCCATCCCCACAGGCTCCGTGCATAAATTCACCTGGCTCTTTGAAAACTGCCCCATGGGCTCCCTGGCAGCAGAGAGTGTCAGTGGGGGCAACCTCCAGGAAGAACAGCCCAAAGTCTCTGCAGACCCTGGGACCCCAGAGAGGCAGGAGACAGCAGCCGAGAGAACCCTTCGGACTTTGCATGCCACCCCTGGCATCCTGCACCACGGAGGGATCCTCATGGAAGCCCGAGGGCCAGGGGAGCTCTGCCTTGCCAAGTATGTGCTCCCAAGCCCAGGGCAGGGGCGCCCCTGTGTACAGAAGGAGGAGCTGGTGTGCGGTGAGCTCCCCAGGATCGTCCGTCAAGTGCTGGGCCGGACAGATGTGGACCAGCAGGGACTGCTGGTTCAGGAGGACACAGCTGGCCAACTCCGACTCCACCCACTCAAACTGCCAGGGCCTGGTGACCCTGAGAATATTGAAGACATGGACCCGGAGCTCCAGCAGCTGCTGGCCTGTGGCCTGGGAGTCTCTATGGCAAAGACGGGGCTGGTGATGCAAGAAACAGGACAGGGCCTAGTGGCATTGACTGCCTACTCCCTCCAGCCCCAGCCAACCAGCAGGGGCCCTGAAAGAAGCAGTGTGCAGCTGCTGGCCAGCTGCATAGACAAAGGAGAACTGCACAGCCTTCCCAGTTTGCGGTGGGAGCCGCCAACAGACTCAAGTTCAGTACCAGTTACTGAGGAGACCCAGAGGCTTCCCCCAACTGAGAGCATCATACGCGTCACCCCATTAGACTCCACCATGAAGATGGGGCATCTGAGAGTCTCAGGATCCACACCCTGCCCACCTCTACCTCGGGCAGCTGGAAAAGTGGTCCTTCCAAATGGGAGACCGGGAGCACCATTGCAGGAAGCAAGGAAGCAAGTGGATATCAGCCATGCTGGGCAGAAAGGGAAGGCAGCCTCAGGAAGACCAGAAGGAACCATTGCTCCTCCTTTAGGGTCTGGGGCTCCAAATCTCCAGGAGGCCATGCAAAATCTGCGTTTGGCAACTGCTGAGGCCCAAAGCCTGCACCAGCAGGTTCTGAGCAGGCATGCACAGGGCTCTGACCCTGCAGCCACCTCCATATCTGCTCAAGATGTTCTGCAAGTGCCGACTCCTACCACTACCCAAGGTAGCATCATGCCTGTGGCTGGAAGGGACGCCAGGATCACAGCGGTCCCCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000037085:ENSRNOT00000055888:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.280 A=NA C2=0.634
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.3),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]