GgaINT0092296 @ galGal3
Intron Retention
Gene
ENSGALG00000006025 | XIRP1
Description
NA
Coordinates
chr2:4875086-4885319:-
Coord C1 exon
chr2:4885266-4885319
Coord A exon
chr2:4883547-4885265
Coord C2 exon
chr2:4875086-4883546
Length
1719 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TCAAAACTGTTTCCCTAAAGATG
3' ss Score
5.43
Exon sequences
Seq C1 exon
AGAACTGTGAAGGACAGCTCCACTCAATCTCTCAACAGCCAGAAAGCAAGCAAG
Seq A exon
GTAAGAAATGTTAGAGATAAGCACCCTTATCTAACCAAATATTTGCGGATAGTGGTGGAGTGTGATTGACATACCCATGCCAGGCAGTGAGGAGTGCTTCCACACTGAATATAGCTGCCAGCTGCTCAGCCCTCCCCCATGTTTAGAGTTTATAGATAATAATAATCATCATCATAATGATAATAAAGTGCACCTTATTTTTAAAAGTGCATTCAACGATTTGAAGTACATTGGCTTGTAAAAATAATTTGCGTTTTACACTTGCTGCCAAATATGCTGGTTTTGATATCCTGGTTTGTTTGGGTTTGTTTGGTTTGGTTTTTTGTTTGTTTTTGTTGTTTTGTTTTTTTTTTAACTAATGTTCAGCACTTATTTTTAGCAAGAACAATCTGTGTGTTAACAGAGCAAAATAACATTGCGCGCCATTGCTTTGAGCAACAACTAATAATATTCCAGGCATAACTCTACAGGCGTAATTCCAAAGGCATGCCAAGGATCAGCAGATCTGTTTACTGAAAGGAAAGCCACCAGGATTATGGTTCTTTTTAGATAATGATTATAGGCTTCAAATACCTTCCCCTTGGAAAAACACCAACCCAGTGCAGTCCACAGGTATTCAGTTGGGCTGTTCTGTGCTCAGAATTCCCAAGATAAGGAGAAAAATGCTGAAAGTGAGGCTCAAAGGCAGTCAGAACAACCACTGTCCAGCCTGTCACTACTGCACCTTCTGAATTCAGTTTGAGTGAGTCTAAATGTAAACTGGGATAGTTGCCAGAATTCACAAAGGATTACTCCCAGAAGGAAGGCTCATAAGAATGTGAGTTAAAAGCCATCACACTGTGATGTGATGTAGCAATGATAAACTGGCTTCTGGCTCTGTAGCAATTGAATTGCTCATTTTTACAGGGCAGCCTAAATGTGAGTGGGTTTGAAGGCACATGAGTCAGCCTCACTCCTGTACAAGTCCTAAATTTTAAAAAAAGCTTTATTTAAGTCTCTAATTGTGGAACTGTACACCTATTCTTATGCAAGTGATGATGTGGGGTACATGTGTGAGTCCAACGGGGAATCAAACATCCTTTCCAAAGTCCCCAATCCTGTGCCACAGGCAGCCCATGGCAGTAACAAAAACCCATCATGCCAGCTGCCTACCCAAAAAGGGGATGTCCTCACCAGCTCACTTTCACACTTTTATTTGGTTCGCTCTCACCATTTTTACTATCAAGATCTCCTCATATATACCTCATTGACTTTCTCCTGGAGCATAAACTTTGCTTGCATACTCTTTTCAAGTTCCCACACTGCCCCACACTTGGAATTAGGAGGCAGAAATTAACTCTTATCTTGCTACTTGTTGATAAGTTTTCTTTATGTCATTCTTGTGGTCAGTCTCTCTTGCTGACAGTCCAAATCAGGCCTCTCTGTTATGCTGTAGCTGAATTGACACCTGAGACTGTAGACTAACCATCGCACATGCCTGGGTAAGAGGCCTTGCTTTAGAGCACGTTGCTGTGGAACAAGAGCTAACACCAAGTCTGGAGTGTGTGCAGTGATATGATGCTTTGGAGTGCTGTGTGCTACTGAACTAAAGGTCTGAAGCTCAGTAAGTGCATGGAGTTCCCTTGTTGGGCTGTCTTTTCTTTTGGCATTCACACTACTAACAGCCAATGGGCTGGGGGTTAAGAGATGAGTCTGACCTTCAAAACTGTTTCCCTAAAG
Seq C2 exon
ATGGCAGAACCTCAGAAATCATCCAAAGTTGCCATCAAGAAAATGGAAGACGACTTGCCTCCCCCTCCCATCCCTGGCTCAATCCAAGTCATCGCTCCCGCGAGCCAGGATCCCAACCCACTCCCTGTGCCTCCTCCTAAGCAAGCCTTCTCCAAGTTCTACCAGCAGCGACAAGTAAATGAGCTAAAAAGGCTCTACAGACACATGCATCCTGAGCTCAGGAAGAACTTGGAAGAAGCTGTGACTGAGGACCTGGCAGAAATGCTTAATACTGAAGATCCCAATGCACAGGGATCTGTGAACCTGGATAAAGTTCTTCCCGGAGAGGTTCAGTCCATGCGCTGGATCTTTGAGAACTGGGCACTTGACTCTATTGGGGACCATCAAGTCACAAAGAAGATGATGGAAGATGAGATAATTCCCGGTGGGGATGTGAAAAGTACTTCTCTGAGGTTTGAAAACCAGTCAGTCAACGGGGACTATCTGTCAACAACAGCAAAGGTATCAGAGACAGACCTTGCCAGAGGGGATGTGCATACTGCCCGGTGGCTCTTCGAAACTCAGCCTTTGGACTCATTAAACAAACTGTACTCAGATGAAACTGAAATGCAAGAGGCAGTTCTCAAGGAGCCGGTCCAGGGAGGTGATGTGAAAGGAGCCAAAGAGCTCTTTGAAGCCCAGTCCTTGGATGCTATAGGACGCTGCTGCTCAGTGGAGGAGAAGAGCATCCTGCAGCTCAAGTCAGAAATCCAGGAGCTAAAAGGTGACGTCAAGAAGACTATCAGGCTCTTCCAAACAGAGCCCCTCTGCGCAATTAGGGACAAAACTGGAAACATCCATGAAATCAAGTCTGTTTGCCGAGAAGAAATTCAGAGCAATGCAGTCAGAACAGCTCGCTGGCTGTTTGAGACTCAACCACTGGATACCATCAACAAGGACACTTCCAAAGTACAAATAATCCGTGGGATCTCATTGGAAGAAATTGGAAGGCCAGATGTCAGCGGAGCAAGGTGGATATTTGAAACTCAGCCTCTGGATGCCATCAGAGAAATTACTGTTGAAGAACAGGATTTCAAAGCTTCAACAGATTTTGTTACAGGGGCAGATGTCACTAAACAGCGATTACTCTTTGAGACCCAGGCCCTTGATTCTTTGAAAGGAGAAGCTTCAGAGAGTGTTGCAGCCAAAGAACAAGTCATTGGAGGTGATGTGAAATCTACACTCTGGCTATTTGAAACTCAGCCGATGGAAACCCTGAAAGACAATGTTGAGGTGGGTCATTTGAAAAAAGTAGAGCTTTCAGCAGAGGAGAAGGGAGATGTGAAACAAAGAAAACATGTGTTTGAGACCTGTCCCCTTGGCAGTATCTCCAAGGCATTTGAGGAAGAAGTTTCAGCTGCCAGCACGGAAGAGGTGGTCAAAGGGGATGTGAAATCTTTCAAGACCCTATTTGAGACTCTCCCCCTAGACAGCATCAAGGAGGTTGATGCTGAGCCCATCACCAAGGAAGAGGAGAAGATTCCACCTGGCAATGTCAAAGCTAATCAAATCCTATTTGAAACTACACCCCTCTATGCCATCAAGGATAGCTTTGGCAATTTTCACGAAGTCACATCTGTAAGCAGAGAGCAAGTCATTAGTGGTGATGTCAAGAAGTACAAATGGATGTTTGAAACCAGGCCACTGGACCAATTTGATGAAAGCACCAAGAAAGTGGATATAATACGGGGGATCACAAAACAGGAGGTGGTGGCTGGTGATGTCAGAACAGCCAAGTGGCTCTTTGAAACTCAACCTATGGATGTCATTCATCACCAAGCCACACAAGGTGAGGAACACCCCTCAATGAAGCGGGAAATCTCCCAGCGGGGGGATGTGAAGACCTGTAGGTGGCTTTTTGAGACCCAGCCCATGCACACCCTGTATGAGAAGGCTGAAAAGAAGCAAGAAGAGGATGTCAGTGTGCCCCAAGCTGATGTGAAATCGTACACATGGATGTTTGAGACTCAACCCCTGGACTCCCTGAAGGGTCAAGAGGAGCAGTATTTGAGAGTCAGTAAAGCATACAGTCAGGATGAATTACAGGGAGTTGATGTCAAAACTGTCCGGCACCTATTTGAGACTGAACCTTTGGGCAGCAGTGTTGTCAGTGAAGCTGACCAAAAGAAAACCCTGAGGTACTCTAGTCGTGTGGAGATACAGTCTGGGGAAGTGTCCAGAGTGAAGGAATTCTTCGAGGCTAAGCCCTTAGATACAACAACAAAACCAACAGCGGTCATCAAGGACGATGGGACGATTGAAGCTGGATCAGTGCACAAATTCACTTGGCTCTTTGAGAATTACCCCATGGACACCCTGAAGGACAGTTCTGAAGGCATCCAGGAAATCCCTCCAGAGAAGGATATCAAGGGGGGAGATGTTGGAGGCAAAAGGTTCATATTTGAGACCTACTCTCTTGACCAAATCCATGACAAAGTAGATGAGACGGAGCTTCACAAGATCCAGAAAGACACCATGAGCAAAGCAAACGTCAAGTCCTGCACAATGCTCTTTGAAAGCCAACCCTTATACGCTATCCAAGACAAAGAGGGGGGATACCATGAGGTCACTTCAGTGCAGAAAGAAGAAATCATGAAAGGTGACGTGAAAGGTGCACGGTGGTTGTTTGAAACGAAGCCCCTGGATCAGATCAAAAAGGAAGAAGAAGTGTTTGTGATTCGGGCTGTCACCCAAGAGGACATCAAGAAAGGAGATGTCCAGGCTGCCCGGTGGAGGTTTGAAACAGAGCCTCTTGACTCTTTCCCTGGAGGAAAGATTTCTGTGCCCAGAACAGTAGATGATGTGCAGAAGGGAGATGTTCAGTCCAACAAGCAGCTCTTTGAGTCCCAGCAAGTGGGCCAAAAGAAGTATGTGAGGATGGTCAGTGTCAGTGATGTTCAGCGGGGTGATGTGAGGACATCTACCTGGCTTTTTGAAAACCAGCCTGTGGACTCCCTTTATGGGGATGCAGACAGAAGCTCATCTATCAGTACAGTGCAGAGAGAGGACAGCCAGAAAGGAGATGTCAAACGTTGCACCTGGTTGTTTGAAACCCAGCCCATGGACACTCTTAAGGACCCAGAGGTGACAGTCAGTACTGGGACCCAAGAACCAATCCCTCGTGCAGATGTGAAAAGCACAACATGGCTCTTCGAGAGCACTCCCTTGGATAAATTCAGTGCTTCTGAATGCAGCAGGGAAACAGAACTGAAAGAAAGAACTATGAGGGAGACTTTAGAGACACTTTGTACTTGCCAGGCTATTCAGCACGATGGGATCCTCATTGAAGCCAATGATACGGAAAGCGTGAAGATGGTGAAGTACCAGCTCAGTAGCCCAGGTGCTCCAGAAATCCTGAAAGAAGAGATTGTGAGGGGCCATTTACAAGGAATCATGCTGCAGCTCCTGCACAGAACCAACGTGGAACCACAGAGTGTGCTGGTGGAGGAGGACAGAGAGGGCAAGATCAAAGTAAGCTCACTGCAGCTTCTGGACCAGAGTGAAGCTATTAAAGGCAAAGAGGACTTGAGTGGAAACGTAGCTAAGGCTCTCCAGAGCCTCCTTAGTCAAGACGCTTCCATCAAAAAGGGGATGGTCATACAAGAGACAAAGTCAGAATCAGTGAAGATGACCCTCTACTCCCTCCTGTTCCATTCTGTCCAGCAAAAAGTTGTCAAGGGGGATGTGAAGTCAACAATAGGGAACCTGATGGCTTCTTCTCAGGAGCAGAGGGCTACAGTAACTGTTAAGCGTGAGGACAATGAGAAGGGGAACGTCCAGCTTTTTGCAAGTTGCATTGAGAAGGGAGATCTGGACTATCTGAAGAACCTTCAGCAGGAGTCAGAAATACAGTCCCTCATCTCTGCCCAAGCAGAGCAAGGGGCAGCTGAAAGTGCCCCACGGGCTTTGCAGAGTACTAATACACATGTCTTAGCAAACAAAGAACAAGTAGAGAAAGTAATGGCAGAGGCAAAGTCAGGGGCTCTGGAGGGAGCAAAAATGGTATTTGCATGTGAAAGCACGGGCAAAGAGGGTGCATTAGAGAGAGAGGTTGTGCATGCAGTGGGTGTGACAGGCACCACTGTGCAATGTCTTGGGAAGCCCCAGAACCTGCCCACAGGGATGGAAAAGGAAGAAATCATGTCAGGGGGCCTTAAAGTAACTACAAAGTCAATTCAAAGGGTTGCAGATGTCAGCAAGAATACAGAAAAAGAAGAGTCCATCTCTGCGTGTTTGAAGGAACCCAAAGCTACGATGCAAGGCATAGCCCAGGCCAAAGTGACAGCTGAGAGGAATGAAGTGGTTGGAGAACAGCAGAGTTTGGTGACTGAGCAAGCCAGCCAGAAGCAGTCAGAAGAGAAGGTCCTTGGGAATGATCTTCAGGCTGCAATGCAAAGCCTGAGGCTAGCAACAGCAGAAGCAAGAAACATTCAACACCACGTCCAAAGCAAGCTACAAAGGAACAGGGAGGAGGTCCACATGGCCTGCAGACAGCAGGTAGCTAGTAAGCAGGAGACAAAGACCCTTCAGTCGACCATACATCAGCAAGAGTCTGCATCTACCATGCGGGAGAATACCAGCACAGCCATCAGGACCAGCACCACTAGAGTCCAGGAGGCATCCCGGACCCACACAAGTGTGTCTCAGAAGAGTATAGCATCACATAAAAAGGTCAGTGCTTCAGAGGAAGTACAGGGAGGACAACTATTGAGCCAGGAAAACCAAGTTGTGCCTAGTAGAGATGTTAGCATTAAGGATGGCCTTTATACTGCCACACCTGTGAAAACCTATATAAATCCTTTCGTTGAGTCTGATTACAAAGAGCAATCAGTGCAAGAAGAAAGAGATGTTATTATCAGAGGGGATGTACAGACAGCTATCAGAGCACTACAAAGTGCCGCCACAGAACAGCGCCTGGTAGAAAAGGAGGACATTGTCCGTGGTAATTTAAAAGCCACACTTCAGTCACTGGAAAAGTCTAACGTTAATGTCTCCAAAGGGGATTTTAAAGCTGCTATGATATACAGAAATGCAGGGCAGTCCTATTCTGTGTGTAAAAAGAAAAGTGAGACTCAAGTCAATAATAACCAGACAGCTGTAGTGGCTTCAGGGTCACAAGCTGATAATGACTTTCCTCCTCCTCCCCCAGTTGCTGTGATGAAAGCAGAACATTGTCCACCCTCAACCAAAGCAACAAGAGAAGGTGCCCCTCCATTATTAACCAGCAAAGATGAAGCCCCAGGATGTTTTTCACCACTCCAGACCCCTCTCCCTCCCCCCCCTTCTCTGTCCTGCAAACCCAGTGACCAGAATTCTACAGAGAAGCCCAAGATTCCTCCAAAACCAGAAATTACTGCCCCACTGAGGAAAAAGCCTGTCCCCCCACCAAAACCTGAGCACCTCTTACACGAGGCATATTCTGCTTCTACAAATAACAGCACAAACAGATCAACCAAATCTGTCCCTCCACCCGTGCCTCCAAAACCTCCAGGCTTGAGGGAGATCAGCATGCCAAAGCCTCCCCCTGCAGAGCTGCAGTTAAGTTGCACGGAAGTATGTGAACAATCAGATCACAGGGAGAGTCAAGATAAATGCTGCACTTTGGAGTCGTCCATGGACAAATCTATCACAGTTCAGGGCCCTGAGAGAAAGCTGCCTAAATATACTGCCAAAACCCCTCTTCAAATGGCAGAGGAAAGGTACAAGGCACGCAAAGGAGGACAAGGCAAGTTCGAACTGGACAGAGCTAAGCCTTCAAAGCCAGTGAAAAACGGAGAGGTTGGTTTTGAAGCCAAGCAAGGAATGTTGAATGGGAAAGCAGCAGCTTCAATAAGCTGTTCCCATGAAGTAGTTCAGAGGCATTCTGAGATGTGTCAGCAAGAGGAGAGATTCTCTTCAGTATCATATCCAGCCTGTCCTGGTAGAGCACAGACACCTAAAATGCCAGGACAAACTGAGTCAAGCACCTCCTCTGTGGGCCATGTCTCTCCCCCAAAGAGAGGAGATGACATTGCAAAAAATGCCTCAGCCAAGGTGGAAAGGGAATGTGTGTATAATGCTTATTCATCGTGGGAAAGTCAGAGAGTCATGCAGGAAGTGAATGAAAGGAAACAAACGAGTCATTCAATGTCCTTCCATCAGCAGCCAAAGAACGCTTCCAAGGAGGAACAACAGGAAAATAGTGAGCAACCTAAATATCCTGATGTGGATGCAGAGGCTTCTGCTCAGGAGAAGCCAGCAGTTATTATGAGAGAAAAATCCAAGAGAGAAACAGAAGATGAACGTCGGAAGAGGCTGTCGGTACACAAAGAAGAGATAATGAAAGGCAATGTCAAGGAGGCTATGGAGATCTTTGAAAATCTCAGGAGACAGGAGGAGCTGCAAGAGATCTTGACTAGGGTGAAGGAGTTTGAAGAGGAAACGAGCAAAGTGGATGTGAAATCTCTGAGGAGCCTTTTTGAGAAGGTCCCTGATTGGGTGGTTCGTCAGAAGGCCCTCCAGGCCAAACAACAGGATGGGGCTGAGACACAGGCCAAGGATGACACTGACAGCATCTCCTCAGTAGAGATGGTTTTTGGGGATCTGGAGAGAGCAAGTGCTGAGATTATCCACCTGAAGGAGCAGACACTTGCGCGACTCTTAGACATTGAGGAGGCTATCAAGAAAGCTCTTTATTCTGTCTCTAGTCTCAAGTCTGAGTCAGACATCGCTGGGCTCTCTGGTCTGTTCAAGGAATCTCTGGGGAGCACCCAGAGCTCTACAAGCAGCAGCAATATCCGCAAAATCAGTATTGTGTCAAGCAAAGCCAGGCAAGAGGGAACCACAGTGGAGACAGGGGAGGCAGCATCTGCGGAAGGTGGAAAGGTGGCAGAAAAGACTGAGGTAACCAAGTCAGAGCTGGAGGTCCCTCGTCAAGTTCATCCTCGTGTCAGCTCTCCCTCCTCACCTTCCTACATCACCATTGAGTCTGCTGCCAGGAAACCAGAATCACCCAGGACAGCACATTCCCCACGAGACATCCCTTCCCCAGATTGTCCGGACACTCCAGGAAAGAAGGATGCTTTTGCTCAGGAGAGTTCTAACTCCGTTAACCATCCATTAGCTGGGTCACCTGGGCGTGACACGTCTCCCTTTGAGAAGAGACCAGAACCCACCCAAACAAATGCTGGGGATAACTCGGTGAAACAGCACACACCTGCTAACACCAACAATCAGGTCAATGAGAAAGAGCAGTGCCCTCCAGATGCCTCCAAAGGCAGCTGCCAGTGTGGGGTGAAAGGAGGCTTTCCAGGCTATTGCTCCCTGAGCACCCCCAGCCCACAGAACCCACGGAGGCAGAAAAGCATCTTGGAGCTGAAGACAGGGCCTGATGGGTCCAAGCTCTATGGAGCCACCCGGACTGTCACGGAGCAGTATGAGGAAATGGACCAGTTTGGAAATAAAATCATCACTTCATCTACCACAGTCACTAAGCAGTCTGAGACACAAACATCCTCCACGTGTGGTGTGGCCTCGCATCCCCAGTATGAAGTATCTGCATCACCCGTGTTCCCAAGCTACCTGAAGAGCCCAGGTGAAAACATCCACTATGGCATTTTCCAGGAGTCAGGAGTGGTCTTTGTCACCTTTGGTAACTCCAGACTAAAGAAATAGGAGATCCTGGAGAGCAAGAGAGAACTGTATAAAGAAGAAAAAGACAGTCCACAATAAAAAATTCTCCTGGTTTATCCACATTCAACACAGGGAATCACCTACACCCTAAAGACTTCTCAGGGTCTTTGTCTTGGTGTTCTTGCACAGACAGGACAAATGCAGTCTGCTTCGACACTGGAGGGAAACAACAGCCCTCACGCGAGCAACCCAACAGACTTGGTGCTGCACCACAACCCAGAGCCCTGACACTGCCAGAAGCACAAAGGAAACATCCATCCATGGGCATCTTGGGCAGCTTCTTCCCCAACAGTATTATTTGGGGCATGGGAGGGGCTACATTAGGCTTCTCTGAACTAATTGGCAAGAAAAGATAGATAGAATCAGTTCAAGAAGAGATCGATCCGGTCATTGGCAAACAAACACTTTGGTGTTATCTTCCATATTTAATTTCAGTACAGAATTGCCAGGAAGGGCATCGTAAACACACAAATATGTATGAGTACGCATACTGACATCGATGGGTGGGTTGGATGGGATTTTTTCTTAGACAATAAATTAAAAAATTCAAATGGCTGACACCATTATTGGTGGGGGAGGTATTTAGCAGAGTATGTTTCCTAGAACTACTTGATGCTACTGAAGATTGTTACATCAAACCCCACAGCTATTATCAGTGCTGTTTCTCCAACGAAAGATGCTCCAGATGAGAAAGAATGGTTGTTGCTTTCCTTTATTTTCGGAATTGTTATTTATTATTCGATATATACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006025:ENSGALT00000038916:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.222
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF080437=Xin=WD(100=0.8),PF080437=Xin=WD(100=0.8),PF080437=Xin=WD(100=0.8),PF080437=Xin=WD(100=0.8),PF080437=Xin=WD(100=0.8),PF080437=Xin=WD(100=0.8),PF080437=Xin=WD(100=0.8),PF080437=Xin=WD(100=0.8),PF080437=Xin=WD(100=0.8),PF080437=Xin=WD(100=0.8),PF080437=Xin=WD(100=0.8),PF080437=Xin=WD(100=0.8),PF080437=Xin=WD(100=0.8),PF080437=Xin=WD(100=0.8),PF080437=Xin=WD(100=0.8),PF080437=Xin=WD(100=0.8),PF080437=Xin=WD(100=0.8),PF080437=Xin=WD(100=0.8),PF080437=Xin=WD(100=0.8),PF080437=Xin=WD(100=0.8),PF080437=Xin=WD(100=0.8),PF080437=Xin=WD(100=0.8),PF080437=Xin=WD(100=0.8),PF051637=DinB=WD(100=5.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACAGCCAGAAAGCAAGCA
R:
GACTGAACCTCTCCGGGAAGA
Band lengths:
358-2077
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]