HsaINT1046803 @ hg38
Intron Retention
Gene
ENSG00000168334 | XIRP1
Description
xin actin binding repeat containing 1 [Source:HGNC Symbol;Acc:HGNC:14301]
Coordinates
chr3:39183215-39192594:-
Coord C1 exon
chr3:39192446-39192594
Coord A exon
chr3:39189526-39192445
Coord C2 exon
chr3:39183215-39189525
Length
2920 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TTTACTACCATTTCTCCCAGCAT
3' ss Score
5.07
Exon sequences
Seq C1 exon
CAGAGACCTGGAGCCAGGGCAGCAAGAAGGTGTCTGTTGGAGCCAGCAGAACAGAACCAATTTGAACAAGAACCTCCAGAGGAACGACGAACCCTGAGACCACAGCTGCTACAGACCACAAACACCCCATCAGCCAAGAGAGACCCTTG
Seq A exon
GTGAGTAACCTACCTCTCCATCCTTCCACAGCAAGGCTGGCTTTCACAGCTGGGATCCCCTCTCCTTCTGAAATGGACGTATTAGGAATGGCTCTGAGTAGGGGAAGGAGATTGAGGGGCATGCATGGGAGGAGGTGAGTGGAAGTCTCAGACATAAAGAACCCACAAAGGAGGTAAAGACAGTGTGAGCCCCATGGGAGCTCTCAGAGTGGCTGCCACAGGCCTGAAGCTAGCAGAAAGGATAGGCTCCTGCCAGGCTGGCATGATCCAGAAAGGCCTGGAGTTGTGATTTTTAAAATACAGGTATGGAGTGCCTCAGGCTTCAGGGCTTCCTCCCAGGGAAGCTTCAGGCAGGCCCAGGATCTGGAGGAAGGAGGAACAGGAGAGAGGTGGGGGCAGGGGGCTGTAAGTAGGCCTGAGTGTGCATTGCTAGAACAAGCCCCATGCCTAGTTGTTGTGGATGACACTCTTGGCATATCTGGCCCAGGGATAGCTCCCAGGGGCTGGCCGGAGCCCAGCTCCCTACATATCATAGCCTAAAACCTGGGGTGGAATTCGGACTCTGCCCATGTCCATAGTCTTGCCCAGTGGGAAAGCCCCCAGGGCAGATTTGGGGGGCTCACGGGAGGGAGACCAGATCTGAATTTGCCCAGATGTAAAGACATATGGAGCCAGCTGGGCCAAGGAGGAGGTGACCCGAGGACAGCAGGGGGACCATCCTGAGAGGCTGGCCCAGCCCTAGGAGACCAAGCTCTAGGACAGTTCTTGGGGCTCACCCCACGTAAGTCTGGTCCCAGTTATGAATTCTGTCCTGACTCTACACTTGTCCCAGCAGTCTCAAGCCAGGCAAAGATGGTGGTGGGAAGGCCAGGAGTCAGGAGACATGCTTCAGGCTTTGCTACTGCCTTGCTGAGCCTCCTTGGACAGCTCCTTTCCCCTCTTTGGGCCTCTGTTTCCCTATTTGAACAATAAGGGGTTTAGATTGAGTGACCTCTGAGGGTCCTTAGGCCTGACATCCCTGGACTCCATGATAATAACTGTCTGTGGCCTTAGCAGAGATTCTGGAAATTCCTGGGGGCGGGGGTGGGGTGAAGCTGATGGTGTGCACACACCATCTGCTCAGGCCACCCTGGTGGTGACAGGATGGAGTAGAGGTGGAGACAGGCTCAGGTTTGCCTTGGGCAGGGGATCCTCATTGGAGCTCAGAAATGAAAGAAAACCACCCAGAGCTTTGATGAGACTCAGGCTGCAGGTTTCAGAGCTCACATTCCCCAAAGGTTCTGATGTCTTTGGTGGACATGCCAGGGTGGGCATGGGGTCAGCAGGTCTCAGTTTCCTCTCTCCTCCTTCTGAGGTAGCCATAGGGAGGAAGTCCTGCCCCACTTACTTCCAGTACCTCCCCCCAGTGCAGACTCCTTTGGCCAGGGAAGGTGTCCAGGTTCTAGCACCTGGCTGGCCTGCAGCCCAGGGGCCTGACACCAGCCCAGGAGGCAGGATAGGGGAGCCCAGGCTAATGAAGGAGATGAGGTGAGCCAAGGGTACTGAGGGTCCCCACTGGCTGGGCCTCAGCCTCCCTCTGAGCCCAGGGCTGCTGTTCTGAGGCCAGGACCTCAGCTATATTTAGCACCCTGTGTGGTGCAGAGCAGTGGGTCAGGGGCAGCAGGAGGGGGCACGTGCTTCCCATTCTTTCCCTACTGGCCTCTGGGGACTGTTAGTACACCTGTCACAAGAGAGATAAGACATACATGGACAGAGACCAGAGAAGGGCTTGAGGGGTGGTAGGTCATTGAGGGGCGGGGGTGTAGCCGGGGAGAGGCTGAGCTGGGGTGGCCATGAGGCCTGCAGGGGTAGGGCTTAGCCTGAAGCCCCCCTGAGTCCGAGCCCCTGAAGCTGTGCTTGCTTGCTTAGAGAGCGGTATCCAGGAGCAAGAGGCAGGGCTGTCTCTGCAGAAAGGACCCTGATCCCATGGTCCTCTCCCTGGTTGTTGTCACCCTCATATCCTCCCAGGGGTGCCTGCTGGGGAATAGACGGGTTCTATGGCCAATAAGAAAGCTTTACACCTGCTACCCTCTTATTTCTTGGGGCCATGCCCTAAATGGAGTCTAGGGACCCCAAGCCAGCACGGCCTTCCATTTATTCACCAAGATCTGACTCTGGGCCTAAGTTCCCTCATCTTTATTTATAAATGATTGTGCTAAAAGACCTTTGAGATCCCCCTAGCTCAGACATTCTCAGTCTTCGAGTATAATGCAGAAAACCCTGACCAGATATTCAGAATTTGGATCTGGCCTAAGCACGAGATATCTGATGAGCAGCTTCCCAGCCCTGATTCTCAACTGCTTCCGCTCTAGCATGGGCTGTTGGCCTCTGCTTGCCTCCTTGGGCCTGGGAAAGGTTGGAGTGCGTTGACAGCCAAGAGGTAAAAGTTAGGCAGCGTTCCAGGTCAACATGGCAAGTCTGCCCTCTGGTGTTCTGCAAAGGAATCTCGTCTCCATAGGAAATCAGTCACCAGTTTAGAGACCTGCCTCTCCAAGGCTGGGACTCCAAAAGTCAGGATTCCCCCAGGCCACTCCCCTGGCAGTCTTCCAGGGAAACACTGATTTTTAACAAAGGAAGGTGAGGATGGGGCATGTCCAGTTTGCCCACTGGAGGTTTATGCGTCCCTTATGGAGCTAAAGGAAAGTGTCTCATGTCCAGTGGTACCATGGTCACTCCCTAGCAACGCATGAGATGTAGGGAAAGCAGGAACCCACTATGATTAATGGGTCCATGTCCTAAGTTCAAGACCTGTTGCCCACGAACCATGCAGGCAGCGAAGTGAAGCCCAGGCCAGGCACATAGAGAGAGGGAAGGAGTCTCTAAGCGTAAGTCACCCAGAGCTACTCTGACTCTGAGCCCTGTTTACTACCATTTCTCCCAG
Seq C2 exon
CATCCAGCCTCTACCCTGCTGAACATCTAGATCTAAGGCTCCCAATCCCATCCTCATCTCTGCCCCTTCTTCTCAGAAGGATGGCCGACACCCAGACACAGGTGGCCCCCACACCAACCATGAGGATGGCAACTGCAGAGGACCTGCCCCTCCCTCCACCCCCAGCCCTGGAGGACCTGCCACTGCCGCCACCCAAGGAATCCTTCTCCAAGTTCCATCAGCAGCGGCAAGCTAGTGAGCTCCGCCGCCTCTACAGGCACATCCACCCTGAGCTCCGCAAGAATCTGGCTGAGGCTGTGGCCGAGGATCTGGCTGAGGTCCTGGGCTCTGAGGAACCCACCGAGGGTGACGTTCAGTGCATGCGCTGGATCTTTGAGAACTGGAGACTGGATGCCATTGGAGAACACGAGAGGCCAGCTGCCAAGGAGCCCGTGCTGTGTGGTGACGTCCAGGCCACCTCCCGCAAGTTTGAGGAAGGCTCCTTTGCCAACAGCACAGACCAGGAGCCAACCAGGCCCCAGCCAGGTGGAGGAGACGTTCGTGCAGCCCGCTGGCTATTTGAGACAAAGCCACTGGACGAGCTGACAGGGCAAGCCAAGGAACTGGAGGCCACTGTGAGGGAGCCTGCAGCCAGCGGAGATGTGCAGGGTACCAGGATGCTCTTTGAGACGCGGCCGCTGGACCGCCTGGGCTCCCGCCCCTCCCTGCAGGAGCAGAGCCCCTTGGAACTGCGCTCAGAGATCCAGGAGCTGAAGGGTGATGTGAAAAAGACAGTGAAGCTCTTCCAAACGGAGCCCCTGTGTGCCATCCAGGATGCAGAGGGCGCCATCCATGAGGTCAAGGCCGCATGCCGGGAGGAGATCCAAAGCAACGCGGTGAGGTCTGCCCGCTGGCTCTTTGAGACCCGGCCTCTGGACGCCATCAACCAGGACCCCAGCCAGGTGCGGGTGATCCGGGGGATTTCCCTGGAGGAGGGGGCCCGGCCCGACGTCAGTGCAACTCGCTGGATCTTTGAGACACAGCCCCTGGATGCCATCCGGGAGATCTTGGTAGATGAGAAGGACTTCCAGCCATCCCCAGACCTTATCCCACCTGGTCCAGATGTTCAGCAGCAGCAGCATCTGTTTGAGACCCGAGCGCTGGACACTCTGAAGGGGGACGAAGAGGCTGGAGCAGAGGCCCCACCCAAGGAGGAAGTGGTCCCTGGTGATGTCCGCTCCACCCTGTGGCTATTTGAAACAAAGCCCCTGGATGCTTTCAGAGACAAGGTCCAAGTGGGTCACCTACAGCGAGTGGATCCCCAGGACGGTGAGGGGCATCTATCCAGTGACAGCTCCTCAGCACTGCCCTTCTCTCAGAGTGCCCCCCAGAGGGATGAGCTAAAGGGGGATGTGAAGACTTTTAAGAACCTTTTTGAGACCCTTCCCTTGGACAGCATTGGACAGGGTGAGGTTCTGGCCCATGGGAGTCCAAGCAGAGAAGAAGGAACTGATTCTGCTGGGCAGGCCCAGGGCATAGGGTCCCCAGTGTATGCCATGCAGGACAGCAAGGGCCGCCTCCATGCCCTGACCTCTGTTAGCAGAGAGCAGATAGTCGGAGGTGATGTGCAGGGCTACAGGTGGATGTTTGAGACACAGCCCCTAGACCAGCTCGGCCGAAGCCCCAGTACCATCGACGTGGTGCGGGGCATCACCCGGCAGGAAGTGGTGGCTGGGGACGTTGGCACAGCTCGGTGGCTTTTTGAGACCCAGCCCCTGGAGATGATCCACCAACGGGAGCAGCAGGAACGACAGAAAGAAGAAGGGAAGAGTCAGGGAGACCCCCAGCCTGAGGCACCCCCAAAGGGCGATGTGCAGACCATCCGGTGGTTGTTCGAGACTTGCCCAATGAGTGAGTTGGCCGAAAAGCAGGGGTCAGAGGTCACAGATCCCACAGCCAAGGCTGAGGCACAGTCCTGCACCTGGATGTTCAAGCCCCAACCTGTGGACAGGCCAGTGGGCTCCAGGGAGCAGCACCTGCAGGTTAGCCAGGTCCCGGCTGGGGAAAGACAGACAGACAGACACGTCTTTGAGACCGAGCCTCTTCAGGCCTCAGGCCGTCCCTGTGGAAGACGGCCTGTGAGATACTGCAGCCGCGTGGAGATCCCTTCAGGGCAGGTGTCTCGTCAGAAAGAGGTTTTTCAGGCCCTGGAGGCAGGCAAGAAGGAAGAACAGGAGCCCCGGGTAATCGCTGGGTCCATCCCCGCGGGTTCTGTCCACAAGTTCACTTGGCTTTTTGAGAATTGTCCCATGGGCTCCCTGGCAGCTGAGAGCATCCAAGGGGGCAACCTCCTGGAAGAGCAGCCCATGAGCCCCTCAGGCAACAGGATGCAAGAGAGCCAGGAGACTGCAGCTGAGGGGACCCTGCGGACTCTGCATGCCACACCTGGCATCCTGCACCATGGAGGCATCCTCATGGAGGCCCGAGGGCCAGGGGAGCTCTGTCTTGCCAAGTATGTGCTCTCGGGCACAGGGCAGGGGCACCCTTATATACGAAAGGAGGAGCTGGTGTCAGGTGAACTTCCCAGGATCATCTGCCAAGTCCTGCGCCGGCCAGATGTGGACCAGCAGGGGCTGCTGGTGCAGGAAGACCCAACTGGCCAGCTCCAACTCAAGCCGCTGAGGCTGCCAACTCCAGGCAGCAGTGGGAATATTGAAGACATGGACCCTGAGCTCCAGCAGCTGCTGGCTTGCGGTCTTGGGACCTCCGTGGCAAGGACTGGGCTGGTGATGCAGGAGACAGAGCAGGGCCTGGTCGCACTGACTGCCTACTCTCTGCAGCCCCGGCTAACTAGCAAGGCCTCTGAGAGGAGCAGCGTGCAGCTGTTGGCCAGCTGCATAGATAAAGGAGACCTGAGTGGCCTGCACAGTCTGCGGTGGGAGCCCCCGGCTGACCCGAGTCCAGTGCCAGCCAGCGAGGGGGCCCAGAGCCTGCACCCAACTGAGAGCATCATCCATGTTCCCCCACTGGACCCCAGCATGGGGATGGGGCATCTGAGAGCCTCAGGGGCCACCCCTTGCCCTCCTCAGGCCATTGGAAAGGCAGTCCCTCTGGCTGGGGAAGCTGCAGCACCAGCCCAATTGCAAAACACAGAAAAGCAGGAAGACAGTCACTCTGGACAGAAAGGGATGGCAGTCTTGGGAAAGTCAGAAGGAGCCACGACTACCCCTCCGGGGCCTGGGGCCCCAGACCTCCTGGCCGCCATGCAGAGTCTGCGGATGGCAACAGCTGAAGCCCAGAGCCTGCACCAGCAAGTTCTGAACAAGCACAAGCAGGGCCCCACCCCAACAGCCACTTCCAACCCCATCCAGGACGGTCTTCGGAAAGCTGGGGCTACCCAAAGCAACATAAGGCCTGGGGGTGGAAGTGATCCCCGGATCCCAGCAGCCCCCAGAAAGGTCAGTAGGGAAGAGCAAGCACTACCCAGAGGGCTGCCTGGGGGGTGGGTGACAATTCAGGATGGCATCTACACCGCTCATCCCGTGAGGACCTTTGACCCACCTGGGGGTGTCCAGCTTTCTCAGAGGGAACCCCAGTCAAGGCACAGGGAGACTGCCCTCTCAGTCCAGGCTCCCCGCCCACTCCAGGGAGGCCCAGGTCAGAGTACTGGGCCAGGGCGGGAGGAGCCTGGGGGCTGCACACAGATGGCCTGGGGGCCACCAGGGAAGGCGATGGCAGAAGTCTGCCCAGGGGGCCTCCAAGCTGCAGAGACCACCCTGAAGACTGCCCCTCTAGGCCGCCACATTCTGGCCTCTGGGCCCCAAGCTGCAGGTGCCAGCCCGCACCCCCATAATGCCTTTGTTCCTCCTCCTCCTACTCTCCCAGCTGCTGTGACAGGACCTGACTTTCCAGCTGGAGCCCACCGTGCTGAGGACTCCATCCAGCAAGCCTCTGAGCCCCTGAAGGACCCCCTTCTTCACTCCCACAGCAGCCCTGCTGGCCAGAGAACCCCTGGAGGGTCACAGACAAAGACCCCAAAACTGGACCCCACCATGCCCCCAAAGAAGAAGCCGCAGCTGCCCCCTAAACCTGCACACCTAACCCAGAGCCACCCTCCTCAGAGGCTGCCCAAGCCCTTGCCTCTATCTCCCAGCTTTTCCTCGGAGGTGGGGCAAAGAGAACACCAACGAGGTGAGAGAGATACAGCCATCCCTCAGCCAGCCAAGGTTCCCACTACTGTAGACCAGGGCCACATACCTCTGGCCAGATGTCCCAGTGGACATAGCCAGCCCAGCTTACAACATGGCCTCAGCACCACGGCCCCCAGGCCCACCAAGAATCAGGCTACAGGCAGCAATGCCCAGAGCTCTGAGCCCCCCAAGCTCAATGCCCTCAACCATGATCCCACCTCACCACAGTGGGGCCCCGGCCCCTCAGGAGAGCAGCCCATGGAAGGTTCCCACCAAGGGGCCCCTGAGAGCCCTGACAGTCTGCAAAGAAACCAGAAAGAGCTCCAGGGCCTCCTGAACCAGGTGCAAGCCCTGGAGAAGGAGGCCGCAAGCAGTGTGGACGTGCAGGCCCTGCGGAGGCTCTTTGAGGCCGTGCCCCAGCTGGGAGGGGCTGCTCCTCAGGCTCCTGCTGCCCACCAAAAGCCCGAGGCCTCAGTGGAGCAGGCCTTTGGGGAGCTGACACGGGTCAGCACGGAAGTTGCTCAACTGAAGGAACAGACCTTGGCAAGGCTGCTGGACATTGAAGAGGCTGTGCACAAGGCACTCAGCTCCATGTCTAGCCTCCAGCCTGAGGCCAGTGCCAGAGGCCATTTCCAGGGACCTCCAAAAGACCACAGTGCCCACAAGATCAGTGTCACAGTCAGCAGTAGCGCCAGGCCCAGTGGCTCAGGCCAGGAGGTCGGAGGTCAAACTGCAGTCAAGAACCAAGCCAAGGTTGAATGCCACACTGAGGCCCAGAGTCAAGTCAAGATCAGAAATCACACAGAGGCCAGAGGTCACACAGCCTCAACTGCCCCTTCCACCAGGAGGCAGGAGACATCAAGAGAGTATTTGTGCCCTCCTCGGGTTTTACCTTCCAGCCGAGATTCTCCCTCCTCCCCAACATTTATCTCCATCCAGTCGGCCACAAGGAAGCCTCTAGAGACTCCCAGCTTTAAGGGCAACCCTGATGTCTCAGTGAAAAGCACACAACTGGCTCAGGACATAGGCCAGGCCCTGCTCCACCAGAAAGGTGTCCAAGACAAAACTGGGAAGAAGGACATCACCCAGTGCTCTGTGCAACCTGAACCTGCCCCTCCCTCAGCCAGTCCCCTGCCCAGAGGGTGGCAAAAGAGTGTTCTGGAGCTACAGACGGGGCCAGGGAGCTCACAACACTATGGAGCCATGAGAACCGTGACTGAACAGTATGAGGAGGTGGACCAGTTTGGGAACACAGTCCTCATGTCTTCCACCACAGTCACCGAGCAGGCAGAGCCACCCAGGAACCCAGGCTCCCACCTCGGGCTCCACGCCTCCCCCTTGCTGAGGCAGTTCCTGCACAGCCCAGCTGGGTTCAGCAGTGACCTGACAGAAGCTGAGACGGTGCAGGTGTCCTGCAGCTACTCCCAGCCAGCTGCCCAGTGAGGCCCACCGCCTCCCACCACACCTGCCACCTGTTCCTGGCCTCCACTGCCCCAGGACTGAAGTGGGTACCTGCCTCCTGTACACTGGAGCAAGGACCAAGAGGAAATGGCATCTTCAGAGGATTACTGTGGGCCATTTCCCTTTCGCAGTTCTTTCAATAGGCCCAGTTCTTCCAAATGGAAAAAGAAAGGTCTGGAAGAGGCCCACAGAGTTGCACAGGCGTGGGGGTAGGATGGGGGCTCCCAGCTGCTTGTGGAGGATGTAATATATACAGACACACACATGTTTTTCACACAGGCCTGGCCCACGCATCGACATGTGTGAATTTGCACACCACTGCCTGAATTGGAGCCCCCCAGAGTGTCCCTCTACCCAGAGTTTTTATTTCTTTAATTAGTCTGAGTGTTCCCAGCCATCTGCTCCTTAATCCCTGGAGAGGAACAGAGCCAACTGGACACAGCGTTGGTCTCTGTTTGGAATCACTGTGAGGTCTCCAGAAGGACCTGGCCGCCAGCCCCTTCATCACCATCTCCATCATTCAGCTGGTCATCTGGTGGCCCAAAGGTCACCCAAAGAGTCAGCAATCAGCATGTCCCTAGAAGCCAAATGCACTGCCTTTCTCTGTCCCCATGACTGTCCCCCACTCTGCACCCCAAATGGGAAGCATACGGTCTGAATAAATCCAAGTTTTATTCTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168334:ENST00000340369:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.640
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.8),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains