BtaINT0040468 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112460810-112461757:+
Coord C1 exon
chr8:112460810-112460955
Coord A exon
chr8:112460956-112461549
Coord C2 exon
chr8:112461550-112461757
Length
594 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
TTCCTCTCCCCCCTTAGCAGAAT
3' ss Score
7.34
Exon sequences
Seq C1 exon
GATGACAATAACCTGTTAAAACAGCAACTTAAAGATTTCCAGAATCACCTTAATCATGTAGCTGATGGTCTGATTCGTCCAGAAGAAGTGGCAGCTCGTGTAGATGAAGTAAGGAGAAAATTGAAATCAGGAGCTGGAGAGATGAG
Seq A exon
GTAATGGAAGGTCAGGACCGCCAGGTGTAGAGTGGGCTGAGTTGTGAATGTGGGCTTCAGTGACAAAATCCACTTTCTGCAACTGTGCATGGCTGATTTCTTTTGTAAGGTTTTCTCCTTATCGTATGACCATGATTGAGACACAGATTACTTAATTCAAGTTGTCCATCACTGATTTTTTTAATCTTTTATATGTTTTGTTATTATTTAATTTAAAAAACATAAAGGTTTTATGAGTAATGCATTCTTGCAAGCTTACTGCAGATGGTCAGGAAGTAGAGTTACATTATACACTTTAAGTAGAAAACAAATAGCTAAAGAAAAACAGGCTAATTTGAAAATGTGAAATGGGCGTTTATTCTTTGAACATACATTGTTAGCCTGAAGGTAGCCTGTGCTCTCAGAGTGGCAGCAGTCAGTTGATAAAACAAAGCTTTGCACTCCAGAGGTGCACAGTGATTTGCCGTGGATTGACAACAGCTGCCGTCCCACACAGCCCTGCTTACTCGTGTACTAATGTCACTGGCATGCCTGCGTCCAGCGTCAAAAATAAAATGTCACATTTATAACATCTTTCCTCTCCCCCCTTAGCAG
Seq C2 exon
AATCCACAGTCCTTCAGATGTCTTAGGGAAAAGTCTTGCTGACTTGCAGATACAATTCAGTGAAATGCTGACACGTTCTCAGTGGGAGAAAGAGGAAGCCCAAGGGAGGGAAAGAAAACTCCAAGAAGAAATGGCTCTGCATCAGGAGAAGCTGGCGGACGGACAGGAAGCATTCAGGCAGGCCTGTGAGAGAGCACTAGAAGCTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417:ENSBTAT00000061592:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.531 A=NA C2=0.414
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCAACTTAAAGATTTCCAGAA
R:
CCTAGCTTCTAGTGCTCTCTCACA
Band lengths:
334-928
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]