GgaINT1009808 @ galGal4
Intron Retention
Gene
ENSGALG00000001513 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr17:8359304-8360090:+
Coord C1 exon
chr17:8359304-8359449
Coord A exon
chr17:8359450-8359882
Coord C2 exon
chr17:8359883-8360090
Length
433 bp
Sequences
Splice sites
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
3' ss Seq
AATGGATCATTCTTTTTCAGATG
3' ss Score
8.44
Exon sequences
Seq C1 exon
GGAGACAATAATCTCCTGAAACAGCAGCTTAAAGATCTTCAGAATCAGCTAAGCCATGCCGTTGGTAACTTGATACACCCCGAAGAAGTCCTAGCTCGTATAAATGAACTCAAGCAGAAGCTTCGGACAGGAGCAGGAGAGATTAA
Seq A exon
GTGAGTAAAATAGAAACAATGTTAGATTTATGCATGTGTTATTTCTCCATGCATGGGAGCAATGAAGTACATTTGCTGCATCCTACAGAGTACGATGTAGGGCGGTTCAGACATGACCATTAGCACCTTGTGTTTAAGAGAACATCATCTGAGCTCAGTTAGTTACATTACTGAGGGACATATACATCCCTCTTGGGTTTCACTACAAGGAATGGAGAACTTGTCTTTTTCTCCTTTGTCCCCAGCAACAAAAAATGGAAATAAGCATGCAGAACAGAATAACATTGGGCACTGAAACCTATTCAGCACTTCACCTCCATTCATTTACACTGAATGTTTTAAACTAGTGCTATTGAACTGGGCTGTGCTGGTTTTTATGTCTGGTATTGTGATTTAAAGTTGCTATTATCTGCAATGGATCATTCTTTTTCAG
Seq C2 exon
ATGTCAGAATTCAGCTGATGTTTTGGGGAAAAGCCTTGCAAGTCTGCAGAAAGAATTTAATAACATTCTTGCTGATACACAAAGGGAAAAAGAGAAAGCATGGGAAAGACAGAGACAATTGCAAGAGGAAATGGTATCCCAGAAGGAAAAACTGGAAGATATACAGGAAAAATATAGACAGGCATGTATCAAAACTATGAAAGCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513:ENSGALT00000002299:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=NA C2=0.186
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCTCCTGAAACAGCAGCTT
R:
TGCTTTCATAGTTTTGATACATGCCT
Band lengths:
342-775
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]