RnoINT0038556 @ rn6
Intron Retention
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14336127-14336905:+
Coord C1 exon
chr3:14336127-14336272
Coord A exon
chr3:14336273-14336697
Coord C2 exon
chr3:14336698-14336905
Length
425 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TTCTTGTTTTTTCTCCTTAGAAT
3' ss Score
10.97
Exon sequences
Seq C1 exon
GACGACAACAGCCTACTAAAGAAGCAGCTGAAAGACTTTCAGAGTCACCTTAACCATGTGGTTGATGGTCTGATTCATCCAGAGGAAGTAGCAGCTCGTGTGGATGAGCTAAGGAAAAGGTTGAAGCTAGGAGCTGGGGAGATGAG
Seq A exon
GTAAGGAGAAGCAGGACCCTATGTGAGCGTGAGCCTTCCTTCCCACATCAGAGCCGTGCCTGGGACCAGCCATGAGCTTGTCCTCCTCAGGCTTTGTAATACTGATTGACGTTTCCGAAAGAGTATGGTGCAAGACTGCTTAATTCTGATAATAGCATTAAAGTATTTAAGAGTCTCTCTTGAGAGAACATTGTATTTGATCAGAGAGAACAGCCATATTGTGCACTTTGGGCAGAGAACCAGTATACAACAGGACAGTCAGGTTCATGGACATTTATTGTTAGTCTGTGTCTTCAGAATGGCAGCAGGGGTTTGATATAATGGTTTACACTGATACACTGATAGTTTATACAGTGCTTTCTCCCCCTGATGTTAGCATGAACACGTTTGTGTCAAATTTATACCTTCTTGTTTTTTCTCCTTAG
Seq C2 exon
AATCCATAGTCCTTCAGATGTCTTAGGGAAAAGTCTTGCTGATCTACAGAAACAGTTCAGTGAAATCCTTGCACGATCCCAGTGGGAAAAAGAGGAAGCCCAGGTTAGAGAGAGGAAACTCCATGAAGAAATGGCTCTCCAGCAAGAGAAACTGGCAAATGGTCAAGAGGAGTTCAAGCAGGCCTGTGAAAGAGCACTTGAAGCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015:ENSRNOT00000007776:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.286
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACAACAGCCTACTAAAGAAGCA
R:
AAGTGCTCTTTCACAGGCCTG
Band lengths:
343-768
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]