BtaINT0040469 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112461550-112462608:+
Coord C1 exon
chr8:112461550-112461757
Coord A exon
chr8:112461758-112462428
Coord C2 exon
chr8:112462429-112462608
Length
671 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
GAAACTTGATTTCCTCACAGATT
3' ss Score
6.1
Exon sequences
Seq C1 exon
AATCCACAGTCCTTCAGATGTCTTAGGGAAAAGTCTTGCTGACTTGCAGATACAATTCAGTGAAATGCTGACACGTTCTCAGTGGGAGAAAGAGGAAGCCCAAGGGAGGGAAAGAAAACTCCAAGAAGAAATGGCTCTGCATCAGGAGAAGCTGGCGGACGGACAGGAAGCATTCAGGCAGGCCTGTGAGAGAGCACTAGAAGCTAGG
Seq A exon
GTAAGAGGTGGGCAGGAGGCAGCCGGAGGGGAGCGTTTAGGAAACATGTGCGCTTTTCAGCAAGTCACAGCGCTTCCCTTTCGTGTAAATACAGAGTCGGGCGTTCCCTGGTGGCCCAGGGTTAAGACTCCTCACTTTCGTGGCCCAGAAAGTGGGCTTGGGTCCCTGGGCGGGAAACTGACTCCACAAGCAGCACAGCATGGCCACACACACAGTGCTCGCTCTGTTCATTACACCTTAATAAGGGGTTATACCTTTACGGTGTAATTTTTAAAAAATACAGTAATTGCTGTCAAGTTTCACTTCTAGTAAGTCAGACTGTGTGTGACTGAAATGTAGCCCTGAGTGTGGTGACCGATGTCAAAGTCAGGCTTTGGCATGACACTGTGTTTTCCTTATTTTGGAAGCAAGTGAGCTGTTTCTTAATGTGCAGGTCAGTAACACCACATTGCTGGAGCATAGTATAGTGCAGGAATCTGAGTTCTTGATGTAACTATTCTAAGGATGAGGCACATGTTAAAGTGGATCCTAGAGAGCAGTTGTGACTAACCCATCCCCAGTAAGCCATTAATACTCTTTAGTAAAATGAAATACAATTCTCCAGAAGGTGTTTATTTTGCTCAAAAAATATTTTGCTTAAAAATCATTTTTGAAACTTGATTTCCTCACAG
Seq C2 exon
ATTAATTTTGACAAGAGGCAACATGAAGCAAGAATTCAGCAGTTAGAGAATGAGATTCACTATTTACAAGAAAATCTGAAAAGTATGGAGGAAATCCAAGGGCTTACAGATCTGCAACTGCAGGAAGCTGATGAAGAGAAGGAGAGAATTCTAGCCCAACTCCAGGAGTTAGAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417:ENSBTAT00000061592:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.414 A=NA C2=0.133
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCACAGTCCTTCAGATGTCT
R:
TCATCAGCTTCCTGCAGTTGC
Band lengths:
342-1013
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]