RnoINT0038557 @ rn6
Intron Retention
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14336698-14337764:+
Coord C1 exon
chr3:14336698-14336905
Coord A exon
chr3:14336906-14337584
Coord C2 exon
chr3:14337585-14337764
Length
679 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
3' ss Seq
TTAATTGTATTTCTTCACAGATT
3' ss Score
9.89
Exon sequences
Seq C1 exon
AATCCATAGTCCTTCAGATGTCTTAGGGAAAAGTCTTGCTGATCTACAGAAACAGTTCAGTGAAATCCTTGCACGATCCCAGTGGGAAAAAGAGGAAGCCCAGGTTAGAGAGAGGAAACTCCATGAAGAAATGGCTCTCCAGCAAGAGAAACTGGCAAATGGTCAAGAGGAGTTCAAGCAGGCCTGTGAAAGAGCACTTGAAGCCAGA
Seq A exon
GTAAGAAAGGGCGGAGACAGCCAGAGGGCGGCCGTCAGCAAATGCCCGAAGCATGTACACCACGCTCACCCACATCACTCACAGCGTGTCTCACTGCCGTGCTAAAGTCCATTGCTGAATATGGCTGCTGATGTCAAAGCCGGGCCTGTTTGTAACAGTGGTTTCCTTGTTGCAGTGCGAGTGAGCGACATCTTATAATGGACAGGAAGCTAATACCACATTTGCCAAAGTATAGCATTAGACCAGAGTCTGTTTGTTTTTAACCTGCTGATGTTCACATTGAGACAAGCATTCAAATCCCAGAGAATAAGATAAAAGCATCTTTGGTCACTATTTAGTACAAAACTTTGTTATATTCCCTCGTAAGGAAACGATAGCTTCATGGCATTCTTAGTTTGCTTAAACATATAGATATGTACATATGTATGTATGCATGTGTATGTATAAATATGTGTGTTTGTTTATAGTATGTGCTTACATGTGTGTTTATGTGTGTGTGTATATATACACATAATATATACATAACACACACACACACACACACACACACACACACGTCTACAATCCCAGCACTCAGGGCATACAGGTGGGAGCATCACAACTTTAAAGCCAGCTTGTGCTGTATACCAAGAGCCTGTCTCAAAAAAAGGAAAAAGTTCTTAATTGTATTTCTTCACAG
Seq C2 exon
ATTAAGTTTGATAAAAGACAACATAATGCAAGAATCCAGCAATTAGAAAACGAAATTCACTATTTGCAAGAGAACCTAAAAAGTATGGAAAAAATCCAAGGCCTTACAGACCTCCAGCTTCAGGAAGCAGATGAAGAGAAGGAAAGAATTCTGGCCCAACTCCAGGAGTTAGAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015:ENSRNOT00000007776:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.106
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTTAGGGAAAAGTCTTGCTGA
R:
TGGAGTTGGGCCAGAATTCTT
Band lengths:
354-1033
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]