HsaINT0033492 @ hg38
Intron Retention
Gene
ENSG00000119397 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr9:121141381-121142270:+
Coord C1 exon
chr9:121141381-121141588
Coord A exon
chr9:121141589-121142090
Coord C2 exon
chr9:121142091-121142270
Length
502 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
3' ss Seq
GAAATTGTATTTCTTCACAGATG
3' ss Score
8.58
Exon sequences
Seq C1 exon
CATCCATAGTCCTTCAGATGTCTTAGGGAAAAGTCTTGCTGATTTACAGAAACAATTCAGTGAAATTCTTGCACGCTCCAAGTGGGAAAGAGATGAAGCACAAGTTAGAGAGAGAAAACTCCAAGAAGAAATGGCTCTGCAGCAAGAGAAACTGGCAACTGGACAAGAAGAGTTCAGGCAGGCCTGTGAGAGAGCCCTGGAAGCAAGA
Seq A exon
GTAAGACAAGGGCAAGAGGCACCTGGAGGGAAGTGTTTGGCAAATATTAATGTTTTTCAGCAAATTACAATGCTTCCTTTGTCATGTAAATACAACATAATTGTTGTTATTTTCACTTATAACAAGTCAAGCTGGGTGTGACTAAAACTCAACCCTGAATGTGGTTATAATGTCAAAGTCAGGCTTGTTTGTGACATTGTGTTTTCCTTGATTTAGAAGCAAAGGCAAGTTATTTTATAACAGGCAGGTAAATAATGCCACATTCCTAGAGTATGGTGTGTTGCCAGAATCTGGTATTTTTTGATGTGATGATTTTAATGAAGAGGCAAACATTCCAATGACTCCTAGAGATCGTTCAAGATAAAACCATTCCTGACAACTCATTAGTAAAAAATTAAGTTACAGCCTGTTGTAAAATGGGTGATAATTCTATAAAAAGTTTTTATTTTGCTTAAAACATATTTTGCCTAAAAATCATTCTTGAAATTGTATTTCTTCACAG
Seq C2 exon
ATGAATTTTGATAAGAGGCAACATGAAGCAAGAATCCAGCAAATGGAGAATGAAATTCACTATTTGCAAGAAAATCTAAAAAGTATGGAGGAAATCCAAGGCCTTACAGATCTCCAACTTCAGGAAGCTGATGAAGAGAAGGAGAGAATTCTGGCCCAACTCCGAGAGTTAGAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397:ENST00000373850:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=NA C2=0.267
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTTAGGGAAAAGTCTTGCTGA
R:
CGGAGTTGGGCCAGAATTCTC
Band lengths:
354-856
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development