BtaINT0040490 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112487274-112488308:+
Coord C1 exon
chr8:112487274-112487462
Coord A exon
chr8:112487463-112488082
Coord C2 exon
chr8:112488083-112488308
Length
620 bp
Sequences
Splice sites
5' ss Seq
ACGGTACCG
5' ss Score
7.03
3' ss Seq
ACAGGTTGTTCTCTAATAAGACG
3' ss Score
0.76
Exon sequences
Seq C1 exon
GACCTGCTCCACACCACCAAGCGCCAGGATGTCCTGCTTGGCGAGCAGACCAGGCTGCAGGAGGACCTCCAGGAACGCAGAAAGAAGTTGGAAGTCTGCCAAAGAGAAGAGGCAACAAAGCGGCAGCACCTGCAAGCGCTTCAGACGGAGGTGGAGGCGAAGGAGGCCGAGCTGGCCCGGCAGGACACG
Seq A exon
GTACCGCACCCGCGGGCACGCAAGGGGGGCGCTGCCGCGTGCGGAGCGCTCTTCCCCTGGGGTCTGAGGTCTGAGGTGGAGGCGAACGAGGCCGAGCTGGCCACGCGCGGAGCGCTCTTCCCCTGGCGCGGGAGGGAGCGCTCTTCTCCTGGGGTCTGAGGTGGAGGCAGACGAGACCGAGCTGGCCCAGCAGGAGACGGTACCGCACCCGCGCGGCAGGCAAGGGGGCACTGCCACGAGGGGAGCGCTCTTCCCCTGGCGCGGCGCTGCTGAGAAGCTCCCGCTTGGGGTCTTGCTCACCCGAACCTGCCCTGTGTGACCTGAGGGGCATTTCACACCAACTCTCTGACTCCCTTGGTATTAATATTATGGACCATTAAGACTGTAGAACAGGCCCCATAAAGAACCGTGGTGGCCATGTGTTGGTTCCTGCATATCCCCTCCTCACATGCTAGCCAAATCATTTTCCGTCCCCACCTGACCCCCTTTGTAAAGAGAACTCCCTGTCTATCACCGTGGGCTGCTCGCTACTTTCTGTTTGAACTGGAATCCGACTAGTGCCCATGAAGATTCCTGCGGGACACAGTTAGTTGATGACTAACAGGTTGTTCTCTAATAAG
Seq C2 exon
ACGTTTCAGAGACTCCAGAAAGAGAGAGAAAGTGAAGAAAAAAAGTTAGAAGCCAGTCGAGCGACCCTGCAGGAGCAGCAGCAGCAGCTGGAAAAGGAAATAGCAGACCAGAAGAACGCCCTGGACCAGGTGCTCAGCCAGGTGCTGGGGGCCGAGGAGCGCGCCAGGACTCTGCAGCAGGAGGAGAGATGGGGTGAGACCCTGGAGAAGACGCTGTCCCAGACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417:ENSBTAT00000061592:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.476 A=NA C2=0.684
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTCCAGGAACGCAGAAAG
R:
CAGCGTCTTCTCCAGGGTCTC
Band lengths:
342-962
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]