GgaINT0126685 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:9076147-9077427:+
Coord C1 exon
chr17:9076147-9076335
Coord A exon
chr17:9076336-9077201
Coord C2 exon
chr17:9077202-9077427
Length
866 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAAT
5' ss Score
6.76
3' ss Seq
CTTGTATTTGTTTTTGGCAGATC
3' ss Score
8.75
Exon sequences
Seq C1 exon
AATTTGAAAGATAATACAAAGCACCAGGAAGAGCTGCTTAGAGAGCAGGCAACCCTGAAAGAAGATATCCTAAAATGTGTAAGAAAATGTAAAGATTGCCAAGAGAGACAGAAAAAGAGAGAGAACCATTTGCAGCAGCTCCAGAAAGAGATTGAAGAGAAAGAAACAATATTGGCCAAACAAGAAGCG
Seq A exon
GTAAATAACCGGAGACTTGTTGAGCTTTTGGTTGGCCTCTAAAAATAATGCCGGTGGCAAAGCGTTGGGTGCAAGTTTACAAATAACGTGCAGCATTTAGAGACGTGAAGTGTCGCTTCATGAGGAGTAGCAGTAAGGAAAGCTTCAGCATTCTGTTATGTCTAACTGAAAACCAGCCTCCCAGCAAAGGGCTCTTCTTTCTTAGTGGGATCATTGTGTGCAAAACTGAGTGCAAGAAGGGCTAATGTAATAGGAAGCACAGTGCAGTGCTGTGTGTTGGCTGCTGATGTGTTGCTCACTTGGGTGAGCAGAGACAGTTCTCTATAACTTCTGGTTTGTCAGCTGACAAGAGCAGCTGGATATAGTTTGGAGAACTTCATAGAATTTATATATGTTGTGGGAGACAAGTGAACAGTATCTGAGATGATAACATGGATTTCAAATAAAACTGACCAAAGCCTAAACGCATCTGTGTTCCAGAAGTCAAAAACTAAGCAGCAGGAGATTCGGGACTCTTATCTTGAGGTTTATTTCCAATATCTCAAAGCTTATTTTGAGTGGTTTACTATATGCAGCTACTTCTTGCTCTTCTACTGCACTTCAGTGCGAGACCATCAATTGTTTGTGGAAATTATCTTATTTGGCTTTAATAAACCATTAATCACAAGAAAAACCAAGGAAACTGTTCTGAAATTAAGGAGGAAACATGGCAAACACTTCTGTTTGGACTGAGTACCAGACAGTATTTCTTCTTTCAGATTTCTGCTGCTTTAACTTCTACAGTGTCGTTTGGTGATGGTATTTGTTCTTACTGAGTTGCTATGAGTTAAACTGTACCAACTTAAACTTGTATTTGTTTTTGGCAG
Seq C2 exon
ATCCTTTGTAACCTCAAGCAAAATTCAGAACACGAAGGGAAAAAACTGGAAGAAAATACTGCTAAACTCAAAGAACAGAAACTGCTTTTGGAAAAGGAACTCATGGATCAACGTGAGAAACTGGAACAGGCAGTAGCAAAAGTAAGGCTGACAGAAGAAAACAACAGGAAGCTGGAAAAAGAAGCATCTCAATTTGCAGCACTTGAAGAAACTATCAGAAAAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513:ENSGALT00000002299:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.447
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCAGGAAGAGCTGCTTAG
R:
TGCTTCTTTTTCCAGCTTCCTGT
Band lengths:
355-1221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]