HsaINT0033513 @ hg38
Intron Retention
Gene
ENSG00000119397 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr9:121167489-121168321:+
Coord C1 exon
chr9:121167489-121167677
Coord A exon
chr9:121167678-121168095
Coord C2 exon
chr9:121168096-121168321
Length
418 bp
Sequences
Splice sites
5' ss Seq
ATGGTACTA
5' ss Score
3.21
3' ss Seq
CAAGATTATTCTTTATTAAGATG
3' ss Score
1.79
Exon sequences
Seq C1 exon
GACCTGCTTCACACCACCAAGCATCAGGATGTGTTGCTCAGTGAGCAGACCCGACTCCAGAAGGACATCAGTGAATGGGCAAATAGGTTTGAAGACTGTCAGAAAGAAGAGGAGACAAAACAACAACAACTTCAAGTGCTTCAGAATGAGATTGAAGAAAACAAGCTCAAACTAGTCCAACAAGAAATG
Seq A exon
GTACTACACATTTATGATTTTACATAAAAAAAGCATTTTGTGGCTCATGTGAGCCTATTTTTCCCCTGGCAGAAAGCTGCTGAGAAATATCCCCAATGGGACTATGTGTCCCTTAACTGCCCTGTGTAGCCATGGGTGGCATTTATACCAACTGTGTGACTCTCTTACAGACCTTTAACGATCATAGAACATCAGTCCTGTAAAGATACTTAACAGCCACGTGCCATTTGCTGCTTGAATCCCCTCCTCACATGCTGGCCAGATAGCTTCCCAAGCCCTCTTGATCACCTCTGTAATGGAATTGTCCCTGTGGGCTGTCTTCTACTTTCTTTTGACCTGGAATCTGTCTCATGTCCATGCAGGTTCTCTGGGACACTATTTGTTGTTTAATGACTAATCAAGATTATTCTTTATTAAG
Seq C2 exon
ATGTTTCAGAGACTCCAGAAAGAGAGAGAAAGTGAAGAAAGCAAATTAGAAACCAGTAAAGTGACACTGAAGGAGCAACAGCACCAGCTGGAAAAGGAATTAACAGACCAGAAAAGCAAACTGGACCAAGTGCTCTCAAAGGTGCTGGCAGCTGAAGAGCGTGTTAGGACTCTGCAGGAAGAGGAGAGGTGGTGTGAGAGCCTGGAGAAGACACTCTCCCAAACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397:ENST00000373850:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=NA C2=0.355
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACACCACCAAGCATCAGG
R:
TGCAGAGTCCTAACACGCTCT
Band lengths:
358-776
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development