BtaINT0040493 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112490991-112492687:+
Coord C1 exon
chr8:112490991-112491131
Coord A exon
chr8:112491132-112492414
Coord C2 exon
chr8:112492415-112492687
Length
1283 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
3' ss Seq
GACTCTCACTCGCTCTGTAGATG
3' ss Score
9.11
Exon sequences
Seq C1 exon
GAGCAGAAGCAGGAGAACAGCTCCATGCAGAAGGAGATGGCGACTATCGAGCAGGTGGCGCAGGACAACCACGAGCGGGCCCGGCGCCTGATGCGGGAGCTCAGCCAGATGCAGCAGGAGTACGCGGAGCTCAAGAAGCAG
Seq A exon
GTGCGCCCGCAGCCCCGGGCGCGGGGCGCGTCTCAGCCGCGCTCGTGCAAGGAGCGCGGCTCTGTGAAAACTGTCAGACTAGTGATCAGATTGTTCTTCTAGTCTTGAAATTTAGAACTTGCCACAAGAAGAAAGTATTTGTTCAAGATACACTTTTAAAATGCCCCCAAGATACACTTTTGAAATGCGTTAAGTTCACCAAACTTGTTAGTTTTTGAAAGAAAAATGACACTTCTTCAGCATAAAATTTTATCAAGTCCCAAAGTGCTGTGTTGAAATACTAGATTTTATGCCAGAAACAAGTCTGTAAGAGACAAACTCCCAAGGAAACCTCTGATCGCCTGTTGTGTAGCCAGGCCGAGGAGAGGAGAACGGTTCGTCCTCGACAGAGGGTCTCACCCTAGACCCCGCCGTGTCCCTCAGCCCGTGTCAGGGGCTGGCCTACTCCAGAGCTGTCTCGTCAGGCTGCTCAGGCCCCTCGAGTGACCCTGCTACACTCTGTCCTTTGGGTGACCCCACGTGGCCATTTAGTCTCATCTGTTCCTATAACCACGCCCCCAACACACACACACGCGCGCACACACACACACACACCCCTTTGGCTCAAGAAAAAATTACTTGAAAGGCCCCCTGGCCTCTGTAAATTTGGGAGGGCAGTTAGCAGTGAGTATGACTGTGGTATCTTCACTGAGCTCTTTATGGACAGAGCCATATAGAGTGATCTCTCCCACACCACCAGATTCTTCATGTGTAAAATAAAAACATTCAAGCAGACCTTTTCTAAGCCCCTTTAAGTGCTAACATTTATAACCTAGACCACTTAAAACTTGTTTCAGTAAATGCCCCTTTTCTCCTTTGAGGACCGCTAAGGTGCCTCATATAAATTCTCACGTAGCTCTCACGTTGCAGGATACAGGAGGTTTAGAAGTTAGCTAGCTTGCCCTAACTCGCACTGGTAATGACTGTTGGAAGTGAGCCTGGAGCCCAGCGCTGCCCCGCTGCAGCGAGACGGACTGCAATAGTGTGGGCCATCTGCAAGCAGCGCTGCCCTGGGCTTCTCCAAACAGGCATGGCTCCAGTTGGAAGGCCAGGAAATCCTTGACTCGGTAGCTTAGACATACTTGGGTAGCTGGAAAAATCACAAGTTTTTACGGTTCTAATCATAATAAGTAACATTTGTAGGTCTTTCGGTGTATTATACCTGTATTTAAAATATTAAATCATTAAATAATAATGCTTCAGTTCTAGTACTTGGTGGTATTTGACTCTCACTCGCTCTGTAG
Seq C2 exon
ATGGTAAACCAGAAAGACCTGGAAAGAAGACAAGTAGAAATCAGTGAAGCGATGAGGACACTTAAGTCTGAAGTGAAAGACGAGATCAGAGCCAGCCTGAAGAACCTCAACCAGTTTCTACCGGAGCTGCCAGCAGACCTGGAGGCCATTCTGGAAAGGAGCGAACACCTAGATGGAGGGCTGGAAAGCTTGAAGGAGAACTTTCCATTCGCCCTGAGTGAGAAGCCATCACCTTTTGAAGAGAAACTACATTTTTCTCGCGTTCACATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417:ENSBTAT00000061592:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.851 A=NA C2=0.154
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCTCCATGCAGAAGGAGA
R:
TCTCACTCAGGGCGAATGGAA
Band lengths:
348-1631
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]