GgaINT0126688 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:9078243-9078909:+
Coord C1 exon
chr17:9078243-9078383
Coord A exon
chr17:9078384-9078633
Coord C2 exon
chr17:9078634-9078909
Length
250 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAA
5' ss Score
7.46
3' ss Seq
GACTGTGTTTTATGTTGCAGGTT
3' ss Score
11.12
Exon sequences
Seq C1 exon
GAACAAAAGCGTGAAAATAACTGCCTGCAGAGTGATATAGCAGCTGCTGAACAAGTAGCACAGAATAACCATGAACGCACCAAGCGCCTCATTAAAGAGCTTGGCCAGATCCAGCAGGACTACATGGATCTCCAAAACCAG
Seq A exon
GTATAACTGAGTACCCAGATAAAGGCTGTCTGGGGAAAAGCAGTGTCTTCCAGACAGGTGCCTCAGAGGCAAATACAGTTGATTTCATAATTAGGGCTGCACTTGGTCAGAGAGCTTATGATTTCTGATTTCAGTGGTCAAAATGTAAATACTTCAGAAAGAAGACTTGTTCCGTTACATGGGAAATTCCTCTGGGTTGATGTGTTTGTGATATGACAGCGAAGTAGTGAGACTGTGTTTTATGTTGCAG
Seq C2 exon
GTTAAGACTCAAGAAGACCTGGAAAAGAGACAAAGGGAAATAGAGAACACAGCAACATTGCTTAAACTAGAGGTTGAAGATGATATTAAAACAGGGTTTAAATCTTCAAGCCCATCTTCTCCAGAACTGTTGGAAGATTTGGAAGCGTTTTCTGCAGTAAATAAAAGTCTGCAGTGTGAATCTGACAATTTAGAGGAGACGTTTTCATTTGCTGATGCTGACAAAAGAATGTTCTCATCGGAAAAAAAGTTGGATTTTTCTCAAATCTTCATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513:ENSGALT00000002299:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.787 A=NA C2=0.272
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTGAAAATAACTGCCTGC
R:
ACTGCAGAAAACGCTTCCAAA
Band lengths:
292-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]