RnoINT0038581 @ rn6
Intron Retention
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14365706-14368263:+
Coord C1 exon
chr3:14365706-14365846
Coord A exon
chr3:14365847-14367999
Coord C2 exon
chr3:14368000-14368263
Length
2153 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGC
5' ss Score
10.12
3' ss Seq
TTGACCCACCACCTGCTTAGGTG
3' ss Score
5.59
Exon sequences
Seq C1 exon
GAGCAGAAACAGGAGAACAGCTGCATGCAAAAGGAAATGGCGACAATTGAACTGGTAGCCCAGGACAACCACGAGAGGGCCAGGCGCCTCATGAAGGAGCTCCGTCAGATGCAGCAGGAATACCTGGAGCTCAAGAAACAG
Seq A exon
GTACGCACCCCAGAACCCCAGCTGGCTAGCCCAGGCCACCATGTGGGCTCGGTACACTCCCTCCCGCAGGGTGCAGGCAGGGTTTATTGGTTAGTATCTCTTTAAGAGGAATGAGGGAGTTGTGGAAAGCTGACTGTAAGGTTCAGGTTAATTTAGACATACACATAAGGAGAAAGGATTGGTTGAAAACATACCCTTAAAGTTAAATTCAGCTAGCTTTTTAAACCGATATTTATTTACATATTTGTTATGTATGAGTGCATGCGTTTGTGTGTGTGCCCCCACACACTGTGGTGAGTATGAGGAGGTCAGAAGACAACCTGTGGGAGGCAGGTCTCTTCTTTGAACAGGGTTCTGGGATTCAATTAAGGTTGTCAGGATTAACAAGTATCCTACCTGCTGCACCAGGTCAACTAACTGGTTTTAAATGTGTGCAGGCACAGCACCTGAGCGTGCAGGTCCACACGTGTGTGGAAGTTGGGGACCCCTTGGGTATCATTCTCAGGAACACCAGCCGTGTGTTTTTAGATAGGCTGGCTGGCAGTGAGCCCCCACACCCGACATGTTTGTGTGTTCTGGGGCTTGAGTTCAAGTCCTCATGCTTGCCAGTGCTTTACTGACTGACCAATGCATCCCTCAACCCCTTGGCTAACTTTTTATGTTGTGTGTGTGTGTGCATGTGCACATGTGCACTTGTCTGTAGCAATATACATCTGTACACATACATGTGGAAACCAAAGATCAAACCCAGGTATCATTCCTCAGAGGATGGTGTCTTAGTCAGGGTTTCTATTCCTGCACAAATATCACGACCAAGAAGCAAGTTGGCGAGGAAAGGGTTTATTCAGCTTACACTTCCGCATTGCTGTTCATCACCAAAGGAAGTCAGAACTGGAACTCACACAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTACTTACTGGCTTGCTTCCCCAGGCTTGCTCTGGCTTGCTCTCTTATAGAACCCAGGACCACCAGCCCAGGGACAGCACCACCCACAGTGGGCTGGGTCCTCCCACCCTTGATCACTAGTTGAGAAAATGCCTTACAGATGGGTCTCATGGAGGCATTTCCTCAAGGGGGGGCTCCTTTCTCTGTGATAACTCCAACTTATGTCAGGTTGATGCACAAAATCAGCCAGTATAGATGTCATTTTGGTTTTTGACAAGATTCCTGTCTTGATAGTTGCTGTTGCTGTGTTAACACCATGACCAAAAGCAACTTGGGAAGGAAAGGGTTTATTTCAGCTCACAACCCTCAGGTCACATTCTCTGTGAAGGAAGTCAGGGCAGGAACTCAAGATAGGAAGTGAAACAGAGGCCACGGAAGAGCACTGCTTACTGGCACGCTTCTCATGGCCTGCTCAGACTGCCTTCTTATACTACCTAGGACCATCAGACGAGGAGTGGCCCCACCCACCATGTGCTGGACCTTCCCTCACATATCAGTCGTGAAAATGCCTGATGGACTCACCTATAGGCCAGCCTTATGGAGGCATCATCTCCATGGAGAGTCCCTCTTCCCAGATGACTGTAGCATGTGTCAAGTGGGCATAAAACTAACCCACAGTCTCTCACTGGGACCTGAGGCTTACTGCCCCTACATCAACCTGTCTTTATGCCCCTAAACACTGAGACTACAAGCATATGCCACCATACCCAGCTTTTTATGTGAATACTGGAAATCAAACTCTAGTCCTTATGTATGGCACGCACTGTACTAACTGAACCACCGCCCCACCTTTTTTGTTAAGAGTATTGTTTGGTGTGAGTGTGGGTGTTGCATGCAGTTAAAATGGTTCATGTAGAGGCCAGCGAAAGACACTGAATGTCTTCCTTTAATTGCTCTTACTGCCTTCAGACAGGGCCTCTCACTGAAACTTAAGCTCACTGTTAGTCTAGGCTGGCTGGCTGTCCAGCCAGCCCCAAAGATTGACCTTTCTCTACCTTCCCAGTCCTGGAATTGCAAGCATGGCCCCCTCACCCAGCCTTGTGGGTTCTGAGGATTGAATTCAGGTCCTTATGCAGTGACTTACCTGTCCAGTGTCTGTCGATCCTTCACTGTAAGTACAACCAAGACTTGGTTCTGAGTCCTGCTGTTTGACCCACCACCTGCTTAG
Seq C2 exon
GTGGCAAACCAGAAAGACTTCGAGAGGAGGCAGATGGAGGTCAGCAATGCAATGAGGACACTGAAGTCTGAGGTGAAAGACGAAATCAGAACCAGTCTGAGGAATCTCAACCAGTTCCTTCCAGATCTACCAGCAGATCTCACAGCTATTTTGGAAAGAGATGATAACTTAAGAGAGCTGGAAAGCGTGAAAGAGAACTTCCCATTTACCACAAATGAGAGAATTTTTGAAGAAAAATCCAACTTTCCCCAAGTTCACATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015:ENSRNOT00000007776:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.532 A=NA C2=0.386
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]