BtaINT0040563 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021844 | COCH
Description
Bos taurus coagulation factor C homolog, cochlin (Limulus polyphemus) (COCH), mRNA. [Source:RefSeq mRNA;Acc:NM_001077842]
Coordinates
chr21:41952615-41953378:+
Coord C1 exon
chr21:41952615-41952677
Coord A exon
chr21:41952678-41953333
Coord C2 exon
chr21:41953334-41953378
Length
656 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
AAGTACTTCTTTTGTTTTAGGCA
3' ss Score
7.7
Exon sequences
Seq C1 exon
AAGGCAAAAGTGGTACCCAGGAAGCCACAGGACAAGCAGTGTCCACAGCACATCCAGCAACAG
Seq A exon
GTATGAAATACAGAACCTGTCTCCTAGTTGCCTGACACAGCACTGGGAAGTTATAAATAAGTGTTATTGATAGAAGCTCTCCCTCTTTTTAAAATACTGATAATAAATAAACACAAAGCAAGTGTCTTTACTGGTATATTGAGTAGGGAAACTTTCAGTATTAAATTTCAAATTCCTTATCCTTTGTTTTCATTGGTAAACTCTGGTACCAAATGTTCTCTTAAAGTCCTAGTGTTTCTCCCTGATTTGATAAACTGGTCTAAGTATCTTGAACTTCTCGTTCCATTTGTCATATAAAAAATAAATGAGTGCATGTCTATCTTAAAAATAGCCAGGGATCATCCTTTCAAAGACTGGCAATTTAAAGTCAAAGAAGCTAAGAACATTAAAATCTAACTCTGAGTTTCCAATCCTGCCTCAGTTGTGGGTTTGGGATATCAAAGTCATGGATTGGGGGCACTTTAAATATGTAGGTCTACAGTCCTGACTTCTTTTTGGAGGCATTACTTCCCTATTCCAGAAAATCATGAGGAAATTGATTTTTTTTAAAAAGTTTTTTCAAGAATGCCACTCCTTATCATGAGCTTTTTCCATGTGGGTTTCTTTCTGTGGAACTGTCTTCCTGTTGATAATGCCAAGTACTTCTTTTGTTTTAG
Seq C2 exon
GCAAACGACTAAAGAAAACACCAGAGAAGAAAACTGGCAATAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021844:ENSBTAT00000053676:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.773 A=NA C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]