RnoINT0038656 @ rn6
Intron Retention
Gene
ENSRNOG00000005286 | Coch
Description
cochlin [Source:RGD Symbol;Acc:1308536]
Coordinates
chr6:72363669-72364678:+
Coord C1 exon
chr6:72363669-72363731
Coord A exon
chr6:72363732-72364633
Coord C2 exon
chr6:72364634-72364678
Length
902 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
GTGAGCTTCCTTTGTTTCAGGTA
3' ss Score
9.78
Exon sequences
Seq C1 exon
AAGGCAAAAGCAGTACCCAGGAAGCCACGGGACGGGCAGTGTCCACAGCCAATCCGCCCTCAG
Seq A exon
GTAGGAAATGCGAAGCTGTTCCCCTGTTACCTGGCAACAATTTGGAGCCATAGATGTTGTTGGCAGATGCTTTCCTTCATAGCACTAATAGCAGGAAGCAAAGCAGCTATGTCACATTTACTGATGCATTTTTGGATGGAAACATTATATTTTACAGTTCTTCTTTATTATAACCTAGCTCATCCACTCTCGGGAGGTCCTCTCTCTCTCTCCCTGATTTGATGGACCGTGAGGAAAAACTGGTCAGAGACTGTTTTCCACTGTTTGCTTCATGAAATCCCCCTTAGTTCCTGCACTGTCGTGCAGCTAAGAGAAATCAGTATATGTCTGCTACCAGAAAATATCCAGGGATAGCGTCTTCCAGAACAGCGACAATTTAGGTTTACTTTATTCGAGATTTGCTTTATGTGTCTATGTGCGTGCTTGAGTGTGTTTATGTGCACCGTGTGTGCAGGCAAAGGCAGGCCCACAGGACAGTAGTGGTTATTTTGGAGCCCAGGTTACAGGTTATTGTAACTCGAGCGGCTTAAAGTGAGTGATGGGAACCAAACCTGGGTCTTCGGTAAGAGCAGCGAGCACACTTGCATGTCGCTCCATCTCGCTGACCCTGGTAGTGGCCATTTTAAATTCAAAGACATTATAACCATGTGGCTCTGTATTCCCAATCCTGCCTTAATTGTGGGTTTAAGATATCAAAGCCGCTGATAGATTCATACCAAGTCCATAGGCCTGCCACAGTTCTGCTGTGTTTGTTGTTGCTGCTGTTGGAGTATCGCTTTCCCAGCCCAGAAGACCGTGAAAAGAACTTAAAAGTCTTTCTAAGCATGGCACCCCTTGCCATGGGCTCACCCAGGTGGAAGTTCCTGCTTGTTGTTGCCAAGAGTGAGCTTCCTTTGTTTCAG
Seq C2 exon
GTAAAAGACTGAAGAAAACACCGGAGAAGAAGACTGGCAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005286:ENSRNOT00000007365:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.682 A=NA C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]