RnoEX0022659 @ rn6
Exon Skipping
Gene
ENSRNOG00000005286 | Coch
Description
cochlin [Source:RGD Symbol;Acc:1308536]
Coordinates
chr6:72363669-72364905:+
Coord C1 exon
chr6:72363669-72363731
Coord A exon
chr6:72364634-72364678
Coord C2 exon
chr6:72364758-72364905
Length
45 bp
Sequences
Splice sites
3' ss Seq
GTGAGCTTCCTTTGTTTCAGGTA
3' ss Score
9.78
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
AAGGCAAAAGCAGTACCCAGGAAGCCACGGGACGGGCAGTGTCCACAGCCAATCCGCCCTCAG
Seq A exon
GTAAAAGACTGAAGAAAACACCGGAGAAGAAGACTGGCAATAAAG
Seq C2 exon
ACTGCAAGGCAGACATTGCATTTCTCATCGATGGAAGCTTTAATATAGGGCAGCGCCGATTTAATTTGCAGAAGAATTTTGTTGGGAAGGTGGCACTAATGTTGGGAGTTGGAACCGAAGGACCACACGTGGGCCTCGTTCAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005286_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.682 A=0.750 C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009223=VWA=PU(27.8=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCAAAAGCAGTACCCAGG
R:
TGCAAATTAAATCGGCGCTGC
Band lengths:
133-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]