MmuEX0012059 @ mm10
Exon Skipping
Gene
ENSMUSG00000020953 | Coch
Description
cochlin [Source:MGI Symbol;Acc:MGI:1278313]
Coordinates
chr12:51597015-51598299:+
Coord C1 exon
chr12:51597015-51597077
Coord A exon
chr12:51598028-51598072
Coord C2 exon
chr12:51598152-51598299
Length
45 bp
Sequences
Splice sites
3' ss Seq
AAGAGCTTCCTTCTTTTCAGGTA
3' ss Score
8.07
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
AAGGCAAAAGCAGTACCCAGGAAGCCACAGGACGGGCAGTGTCCACAGCCCACCCACCTTCAG
Seq A exon
GTAAAAGACTAAAGAAGACACCAGAGAAGAAGACTGGCAACAAAG
Seq C2 exon
ACTGTAAGGCAGACATTGCATTTCTCATTGATGGAAGCTTCAATATTGGGCAGCGCCGATTTAATTTGCAGAAGAATTTTGTTGGGAAAGTGGCACTAATGTTGGGAATTGGAACAGAAGGACCACACGTGGGTCTCGTTCAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020953-'10-10,'10-9,11-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.682 A=0.750 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009223=VWA=PU(27.8=90.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCAAAAGCAGTACCCAGG
R:
TGCAAATTAAATCGGCGCTGC
Band lengths:
133-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types