HsaEX6070896 @ hg19
Exon Skipping
Gene
ENSG00000100473 | COCH
Description
coagulation factor C homolog, cochlin (Limulus polyphemus) [Source:HGNC Symbol;Acc:2180]
Coordinates
chr14:31348629-31349940:+
Coord C1 exon
chr14:31348629-31348691
Coord A exon
chr14:31349658-31349702
Coord C2 exon
chr14:31349793-31349940
Length
45 bp
Sequences
Splice sites
3' ss Seq
AAGTGCATCTTTTATTTCAGGTA
3' ss Score
7.46
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AAGGCAAAAGTAGTACACAGGAGGCCACAGGACAAGCAGTGTCCACAGCACATCCACCAACAG
Seq A exon
GTAAACGACTAAAGAAAACACCCGAGAAGAAAACTGGCAATAAAG
Seq C2 exon
ATTGTAAAGCAGACATTGCATTTCTGATTGATGGAAGCTTTAATATTGGGCAGCGCCGATTTAATTTACAGAAGAATTTTGTTGGAAAAGTGGCTCTAATGTTGGGAATTGGAACAGAAGGACCACATGTGGGCCTTGTTCAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100473-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.727 A=0.750 C2=0.000
Domain overlap (PFAM):
C1:
PF0381514=LCCL=PD(2.0=20.0)
A:
PF0381514=LCCL=PD(0.1=0.0)
C2:
PF0009223=VWA=PU(27.6=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCACAGCACATCCACCAAC
R:
GGTCCTTCTGTTCCAATTCCCA
Band lengths:
147-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)