DreEX6054748 @ danRer10
Exon Skipping
Gene
ENSDARG00000024032 | coch
Description
coagulation factor C homolog, cochlin (Limulus polyphemus) [Source:ZFIN;Acc:ZDB-GENE-030616-403]
Coordinates
chr17:28730024-28730463:-
Coord C1 exon
chr17:28730395-28730463
Coord A exon
chr17:28730263-28730319
Coord C2 exon
chr17:28730024-28730171
Length
57 bp
Sequences
Splice sites
3' ss Seq
TTCCTATTTCTGTCTTGCAGCCA
3' ss Score
10.86
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GAACAATTAGCTTGCCTTTGGAAGTGTCCAGCCAAACCAGCAGTTCTGCCACCGTCGCATCTGGAGCAG
Seq A exon
CCAAGAAGCCAGTGAAAAAAATAGTGAAGAAGCCTCCTCCAGCAACAGCACACAAAG
Seq C2 exon
ATTGTCCAGTTGATATGGCTTTGTTGCTGGATAGCAGCTACAACATCGGACAGCGGCGGTTCAACTTGCAGAAGAACTTTGTCAGTAAACTTGCAACCATGCTGAAGGTTGGGACACAAGGTCCTCATGTAGGAGTGGTGCAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000024032-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.300 C2=0.120
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009223=VWA=PU(25.4=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTGCCTTTGGAAGTGTCC
R:
TCTTCTGCAAGTTGAACCGCC
Band lengths:
136-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]