GgaEX6038450 @ galGal4
Exon Skipping
Gene
ENSGALG00000009920 | Protein
Description
Cochlin [Source:UniProtKB/Swiss-Prot;Acc:O42163]
Coordinates
chr5:33529186-33530402:+
Coord C1 exon
chr5:33529186-33529251
Coord A exon
chr5:33530126-33530170
Coord C2 exon
chr5:33530255-33530402
Length
45 bp
Sequences
Splice sites
3' ss Seq
TGCTGTATCCTTCATTAAAGGCA
3' ss Score
5.39
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CAGGTACCAACAACCTAGCGCTTGAAGCAGTGGGACGATCAGTTGCAACAGCACGACCTGCTACAG
Seq A exon
GCAAAAGACCTAAGAAGACCCTCGAGAAAAAGGCTGGAAACAAAG
Seq C2 exon
ACTGTAAAGCTGATATTGCATTTCTCATTGATGGAAGTTACAACATCGGCCAACGTAGATTTAATCTGCAGAAAAACTTTGTTGGAAAAGTAGCGGTAATGTTGGGAATTGGAACGGAAGGGCCTCATGTTGGAGTTGTACAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009920-'10-9,'10-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=0.750 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009223=VWA=PU(26.9=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGCAACAGCACGACCTG
R:
CCCTTCCGTTCCAATTCCCAA
Band lengths:
148-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]