GgaINT0054590 @ galGal3
Intron Retention
Gene
ENSGALG00000009920 | COCH_CHICK
Description
NA
Coordinates
chr5:36615299-36616283:+
Coord C1 exon
chr5:36615299-36615364
Coord A exon
chr5:36615365-36616238
Coord C2 exon
chr5:36616239-36616283
Length
874 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
TGCTGTATCCTTCATTAAAGGCA
3' ss Score
5.39
Exon sequences
Seq C1 exon
CAGGTACCAACAACCTAGCGCTTGAAGCAGTGGGACGATCAGTTGCAACAGCACGACCTGCTACAG
Seq A exon
GTACCAGTCACATCTCTCCAACAGTGGAAGTCTCCTGTGTTAAGATGTGCTATAGGGCATGAGTCCCTGACTAACACGCTAAGTTTCATAGGATGTATTTATAAAGGAGAAAACATATATGAAATTCATTTCTGTGTATATCTCATCAGGAAAAGGAATAATTGCTTATAATCAGACTGATTCTGATTTCAGTAACATTTGTGTAAATGAAGAAACACTTGAATGAATTTGGAAAAGTAATACAGGTGACATAAAGGAAGAAAGGAGTCTGTGAGTTCATGGGATATTCATTCCTATTAAATGACAGAGAAGATGGATTATCCATTCCTTTTTACAGAAGTATTTAACAACTAAGTGCTGTCAGGATTTATGAAGCAGAAATTTAGATGCTATGTTAATTTCTCTGCAGAAAATACCACCAGTAAAAGGCTAGATCAGTTTTTATGAAGGCTAGTGGCGTATACGTATTGGACTTGGATCTCATTTGTGAATAGAACATCTGCTTTACAGTTTAAGTCCCAGCTTGCTTCCAAAGCATAAAAACTGTCCCCGTACAGCAGGTAGCTAACTGAAAAATAGTAGGGCTTGGGATGCTGAGCTACGAGTGATTTCTGTATAAGCCTTTTTGTGTATACATTTCAGTAGTCAGCGAGGCAGGTGTAAAAAGGAAGATTAAATTGTTTCATTTGAAAAAGAATATTCTCCAAGGAGCAAAGAAATTGCACTGCAACTGTAACTATTGAATTGACTGCAGAATGATGCAGTCCCATGCCAATTTTCACTGAGGACAGCCTGCAATGCAATTCTTAGAGTCTAAGCTTCTTCTGTACGTCTTGTTGTTCTTAAATGATCCATGCTGTATCCTTCATTAAAG
Seq C2 exon
GCAAAAGACCTAAGAAGACCCTCGAGAAAAAGGCTGGAAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009920:ENSGALT00000037860:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=NA C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]