BtaINT0041898 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014575 | COL4A5
Description
collagen, type IV, alpha 5 [Source:HGNC Symbol;Acc:HGNC:2207]
Coordinates
chrX:61717168-61720518:+
Coord C1 exon
chrX:61717168-61717230
Coord A exon
chrX:61717231-61720464
Coord C2 exon
chrX:61720465-61720518
Length
3234 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TTATTTTTAACTCCTTCTAGGGA
3' ss Score
9.46
Exon sequences
Seq C1 exon
GGAATGCCAGGCCATGATGGGGCCCCAGGACCTCAAGGTATCCCTGGATGCAATGGAACCAAG
Seq A exon
GTGAGATTTATTTGACTTAATCTTAGGCAGTATGCTTGATAATGGACTAAACATTTCAAGGAATCAATATCGAGAATGTCAAATAAGAGATATAGTAGCTTCATGTCTAGGACAAACATAGGGTATGTTCTGAGTTAGCATTTTCAATATACTGAAACATCAGTAATTCTTTAAGCCTGTATAATTAGTTGGGATATTGCATTGAGTTGAAGATTACCTACCAAATCCCTTTTGTGTTTTAGTGTTAAGTAGAATGAGAGTTTTTGCCATACATTGACATGAATCAGCCATGGGTGTACATGTGTTCCCCATCCTGAACCCTCCTCCCTTCTCCCTCCCCACCCCATCCCTCAGGGTCATCCCAGTGCACCAGCCCTGAACACCCTGTCTCATGCATCAAACCTGGAGTGGCAATCTATCTCACATATGATAATATACATGTTTCAGTGAATGAAATGAGAGTTAAATGAGAGTTAAAAAGGAATTAGGATATATCAGTTCAGTTCAGTCGCTCAGTCGTGTCCGACTCTTTGCAACCCCATGAATTGCAGCACGCCAGGCCTCCCTGTCCATCACCAACCCCCGGAGTTCACTCAAACTCATGTCCATCAAGTCAGTGATGTCATCCAGCCATCTCATCTTCTGTCATCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGTCTTTTCCAATGAGTCAACTCTTCACACAAGGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAACACCCAGGACTGATCTCCTTCAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTATCCAACACCACAGTACATGTTTGTACATATAAACACACATATACATGTATGTGTATGTATATATATATATATACACACATACACAAACACATCTATATTATCAGTTTTTAAGAGTAATACTTATGAATGTCATTCATTAACTTTGATTTTTTTAAACTAGGTACACTTAAAATTTTCAAATCTTTCATATTCTTTTTTTTTAATTAAATTTATTTATTTTAATTAGAGGCTGATTACTTTACAATATTGTATTGGTTTTGCCATACATTAACATGAATCTGCCACGGGTGTACACATGTTCCCAATCCTGAACCCCCCTCCCACCTCCCTCCATATTAAACCTTTTTTATCTTGCCTAATAACTTCCTGAAGAAAAATCCTAAGAATCTATATGTAATACACCACATCAGTTTTTACTATGAACTATTAGTATGAAACCTGAAACTTCTCCATCGTAGAAAATAATGAATTTAACAAGTGAGAAAATAAAGTATCATATGCTACAAACAATGTTTCCTGGCCCTCTTTTCTTTAGTCAAGACTAAATCCAACTATTTGGATTAAGTATAAAGTGAGAACAAGAAAAAACAGAGGAAAATTTGCTCTTTTTAAAAGCTTACAAGTATTTGTTTCCATTTCTTATTCCCTCACTTTTCTCCTTATATAGGTTAATGAAATATTGTTTTCTGTGTATCCTTTTGATATTTCAATATTGCACATAATACTCTGTGAAACTATTCTGAAATACCGCAGATCTTTCTAATTAATGACATTTGTCATATTTTATATTAGGGCATAATATTTAAAATAACTTGAACAAACTATTTTGTATTATGCAGGCCATCACAGTTTATGATAATCATTGTAGTGTATACTTGTAGGCAATAAAGTTATTGTTACCTCCAATATTTCTCCAAGTCAGTGTCATCCTTGCCACTAATAATAATATTCTGATTTTGGATTTGTGAGGCTTACTTGTGTTTTTCAATTTTGCTTGGGGCAACCTTACAGTGATAGGACCAACATGGAGTTAGCTTGCATGGCATATTGCTTGTTAAAGCAGGCTACATTCATGTGCCTATTATGGTAATTTGATTGTTTTTTGCTAGCATGTCTTGAGCAACAGACAGACTACTAGTCAAAGTTTTAATAAGACCAGATATATCTACAATGAGTATAGTATGCTATGTGATTAAAGGTATCTTTTTCTTTTTTTGTTAAAGCAACACCTTAGCAGATCTCATGATTAGTTGCATTTGAGTCCCCTCCAATTATGTAAGCAACAAAAAAATTTTAAAAACATTATGTGCACCTGCAGATTAAATGGAATCTTATATTTCTAACTATGTAACTGGGCTTCCCTTGTGGATCAGCTGGTAAAGAGTCTGCCTGCAATGCGGGAGACCTGGGTTCGATCCCTGGGTTGAGAAGATCCCCTAGAGAAGGGAAAGGCTACCCACTCCAGAATACCGGCCTGAAAAAAGCATTATGTGTACCTGCAGATTAAATGGATTCTTATATTTCTAACTATGTAACTAATTGAATGAACCCTAGAGATGGAGTCAAAATATATGGATTCTTTTGCTCTCTGTTTTCTAAACTCGATGTATAGGCCACTTCCTTTCTGTTTGGGCTTATTTTTTCCATGTATAAAAAGTAGTGGAGAAAGGGATATTGGACAATAAGTGAAAGGTACATAGCTGTATCATTTACTCTTTTAAGCCTCTGACGAGGATGTTTCTAGAAGTACTACAGCACATGGGTATTTGAAAGGAGGTTGCAATGGGGTTCTTCTACAGCCATTTTAGCCTTTGTTTTCTAAACCAAATGTCCATATTAGTACTTTACAATAGGGAGTGAGAAAGACTGGATGCCTAGAGAACATAATGACCTGCAATTGCTAAAACTATTGCTATGATTATACTCTTGGTGATATTAATGGCATTCTTTCTAACCATCTTTTCCTCTTTACAAAAATAATTTGAAATAGTTTACAATAAAAGAAAAAAGCAATGGGGCAGTTAAAATATGAATCTATATAATACATGGGCAGGAAATTGGGGCAGATCATTAACTATTAAATGTGATGATAGCCAGGAATCTGTGATATGATTCTCTCAAAATGGATTTGTCAGAAGAAAATGACTAAAGTAGAAGATTTTTTTCCTTTATTTCTGATTGGGATTCATGAGTGGAGATAAAAGTATCTTAAAAAGTTGAATTGATATGGATAGTTGATATAAGGTAATTGAAAAGTGAAGGCTAATGAATTTTTGACAATCTGGCATGTTTCAAAATGACTTGCAGAAATTTTTTCAGTAAGTCATTGTTTGTTGGTATAATGATGCTTTTTTTTTTTGTTCCTCCATGCTTTTTATTTTTAACTCCTTCTAG
Seq C2 exon
GGAGAACGTGGATTTCCAGGCAGTCCCGGTTTTCCTGGTTTACAGGGTCCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014575:ENSBTAT00000019400:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]