GgaINT0068141 @ galGal3
Intron Retention
Gene
ENSGALG00000008141 | COL4A5
Description
NA
Coordinates
chr4:14053338-14054223:-
Coord C1 exon
chr4:14054161-14054223
Coord A exon
chr4:14053431-14054160
Coord C2 exon
chr4:14053338-14053430
Length
730 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGAA
5' ss Score
0.93
3' ss Seq
TTGTCATCTTCAACCCTAAGGGA
3' ss Score
5.64
Exon sequences
Seq C1 exon
GGTTTACCAGGACAAGATGGGCCACCAGGACCTCAGGGTATCCCGGGCTGCAATGGAACGAAG
Seq A exon
GTGGAATTCCTTTAAAATTCTAAACACAACAACAATAATGTGATAAAGAGCTCCTTTTCTTCTGATCGTGGACAATAAGTTTAATTTGTTGTGATACTTACAGTTACTGAGTTGTGCGTGTAATTCTTTAGTGATTCATACACTTGCATCTGAAACAAGAGGTCATGACCTGATATCTAAAGCAGCAACTGTTGATCACAACATTAGTACTCTGCAGCCAACATAGTTAACGTCTTTGTTACTTCTTCCAATACTTAATTTTATGGTTGACAACAGAGGAATGTGTCATAATTAGAATAATATGCTATGATCTTTATAGTAGACTTGCTGCCACAGAAAACTTACCACTAAACTGTGGGACTTTCTAATTTTTACTTTTTAATAATAATACCTTGAAATACTGACTCAGTGTCCCTGTTGAAAGGGATTGATTTTATTCAAATGTGTTGCTTAGCTTCACTTTATGATCTTTCTTTCTGAGAAACTGATCTTCTTTAGCACTGTGTGCTTTTTCCCTCTCTGCATTATAGTAGCTTGCCTGGAGGTTTGAAATATTTGTATTCGAAAAGCTCTGTTTCAGTCACTTGTATGATTTTTGCAAACCATTTAACGTACAGATTATCGTAATTGCTAGCTAACAATGAAACTGGGCTCTTCAGTAACCATTTGTTTATCTGTTTTTGTTATGTTTCATTTTGCTTTTTGGCTAATTGTCATCTTCAACCCTAAG
Seq C2 exon
GGAGAACGTGGATTCCCAGGCAGTCCAGGTTTTCCAGGTTTACAAGGGCCTCCTGTAAGTAAAAGTTTTCCAAATCAGCTGTCCGTAATCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008141:ENSGALT00000013221:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.968
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(30.3=100)
A:
NA
C2:
PF0139113=Collagen=PD(34.8=74.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]