BtaINT0042109 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010179 | COL5A3
Description
collagen, type V, alpha 3 [Source:HGNC Symbol;Acc:HGNC:14864]
Coordinates
chr7:15780434-15781387:-
Coord C1 exon
chr7:15781334-15781387
Coord A exon
chr7:15780542-15781333
Coord C2 exon
chr7:15780434-15780541
Length
792 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
TGACCTCTGTTTCTGCCAAGGGC
3' ss Score
6.57
Exon sequences
Seq C1 exon
GGTGAGCCAGGAGAGCCTGGAGACCCAGGACCCCCCGGGACCCCAGGCACCCCG
Seq A exon
GTGAGTGACTTTGTTCTGGGCCCCTGCACCCATCTCAGGGAATCCCTGACCCTTGGGCATCTTGGGCCCCCATGACCTCTGGGCAGCCCTAAGTCACTCATGGACCCAGACCTACGGGCATCCCCAGTTATTTTGATGACAGAGACCTGAAAGGTATCAGGGTGGCTACATCAAGTTCTCTAGGTTGTGTACTGCACAAGGGTGCGTGGCTGAGGGGGCAGGTGGGGCTCAGATCTAAAGCACAAGCCTTGGCTTGAGGATGAGCTGCCCAGAGGGGATCCCAAAAATATTGATTCATTCACTTGTTTGGCTGTGTCCAGTGTTAGTTGGGACACATGGGAGCTTCGCTGGGCCATGTGGGATCTTTCCTTGGGGTGCACAGACTCTCTACTTGTGTCGCGAGAGTTCAATAGTTGTGGCATGTGGGCTTAGTTGCTCCACAGCGTGTGGGATCTTAGTTCCCCGACCAGGGATTGAACTTGTGTTCTCTGCATTGCAAGGCAGATTCTTAACTACTGGACCACTAGGGAGGTCCTGGGATCCCTTTTCTGATTCACCCCAGAGTGGCACATGGGCTAGCCCAAACTTGCCCATGACCTCTGGTCAACTGGATCACTGTGACCCCTGATTCCAGTAAATCCTAGATTCCTCTGACCCTTGGGCAGTCTAGGCTACTTTGACCCCTAACCCCAGGAAAGTCCCAAGCCACGCAGATTCCTGAGTTCAGGTATGCTAACCTTGACCCCTGGAGAGTCCAGGCTACTCTGACCTCTGACCTCTGTTTCTGCCAAG
Seq C2 exon
GGCCCCAGGGGAGAAGTTGGTGAAAAGGGGGATACAGGCCCATCTGGGGCTGCTGGACCCCCAGGCAAGAAAGGACCCCCTGGAGAGGATGGAGCAAAGGGGAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010179:ENSBTAT00000013440:52
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]