BtaINT0043103 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009331 | CPAMD8
Description
C3 and PZP-like, alpha-2-macroglobulin domain containing 8 [Source:HGNC Symbol;Acc:HGNC:23228]
Coordinates
chr7:6083223-6083910:+
Coord C1 exon
chr7:6083223-6083359
Coord A exon
chr7:6083360-6083754
Coord C2 exon
chr7:6083755-6083910
Length
395 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
3' ss Seq
GTCTCCCGCTCTGTCCCCAGGAC
3' ss Score
12.88
Exon sequences
Seq C1 exon
TGGTCTCGGCCGAGGTGGAAATGACAGCTTATGCCCTGCTGACCTACACCCTCCTGGGAGACGTGGCCACCGCCCTGCCTGTGGTGAAGTGGCTGTCCCAGCAGCGAAACGCCCTCGGGGGCTTCTCTTCTACTCAG
Seq A exon
GTGCGCCAGGCAGAGCCAAAGGGAGGGCTCAGGTCTGGGTGGCCTAGACTCGGGACTCAGAGCCCTCTAAGAAGTTACCCAGTGCTTCTAGTCTTAGGACGGCTCCTTACCTGCACCTCTCGGAGCACGAAGCCCAAGAGAGGATGGGAGGATGGGGCTGAGGGATGGAGGCGGCAGGCTCTGGGATAGGGACCAGCCCCTCCTTCTGTGGAGATGCCCCCCAGCTTCCTGGGGTCCCCAACTCTGTGGGTGTCTACACCAGATCTGCTCTCCGTTCCAGCCACATGAGTCCCTGGCCTCAGTGAGGGTCCATGGAACCCCCAGTTTGGGCCAGACCTCTGGCACAGGTGGAGGCACCTTCTGGGGCTGACTTCGGTCTCCCGCTCTGTCCCCAG
Seq C2 exon
GACACCTGCGTGGCTCTGCAGGCCTTGGCAGAGTACGCCATCTTGTCCTATGCGGGCGGCGTCAACCTCACCGTCTCCCTGGCCTCCACCAACTTGGACTACCAGGAGACCTTCGAGCTGCACAGGGGCAACCAGAAGCTTCTGCAGATGGCCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009331:ENSBTAT00000047290:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(18.0=100)
A:
NA
C2:
PF076789=A2M_comp=PD(5.2=25.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCGGCCGAGGTGGAAAT
R:
GGCCATCTGCAGAAGCTTCT
Band lengths:
287-682
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]