BtaINT0043706 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008944 | CRB1
Description
Bos taurus crumbs homolog 1 (Drosophila) (CRB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192482]
Coordinates
chr16:78266131-78269610:+
Coord C1 exon
chr16:78266131-78267040
Coord A exon
chr16:78267041-78269481
Coord C2 exon
chr16:78269482-78269610
Length
2441 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGTTGCTTTTTTCTCCCTAGATA
3' ss Score
12.25
Exon sequences
Seq C1 exon
GTATCGCAAATGCTGTTTTTAATGGACAAAGCCGTGAGATAATATTCAGGAGCAACGGGAACATCACCAGAGAGCTCACCAATGTCACCTTCGGTTTCAGAACGAGGGATGCCCATGCGATCATACTGCACGCAGAGAAGGAGCCTGAATTCCTTCGTATTCACATTCAGGATTCCCGATTGTTATTTCAACTGCGAAGCGGCAACAGCTTTTACACGCTGAGTCTGACGAGTCTGCAGCCCGTGAGCGACGGCGTGTGGTACCAGGTGACCATCTCCATGACAGACCCGGGGGCCCAGGCCTCCAGGTGGCAGATGGAGGTGGACGGACAAACGCCTCCTGTGACCAGCGCAGTCGCTGCTGGGAGCCTCAGCTTCCTGAAGGATGACACAGACGTCTATGTGGGTGACCGAGCTAGCGACAGCACGCGGGCCCTGCGAGGGTGTCTAAGCACGATAGCAATCAGCGGCCTCTATCTCTCTTACTTTGAAAACGTCCGTGGCTTGATGAACAGACCTCAGGAGGAGCGGTTTCTCAAAGTCTCCCGGCCTCCGGTGGAGACGGGCTGCCTGCAGCTCGACGCCTGCCGCTCCGGGCCCTGCCTGCACGGAGGACGCTGTGAGGACACCTACAGCTCCCACCGCTGCACCTGTCCCGCGGGGCGGTCGGGGCCGCACTGTGAGTTCCACGTGGATGAATGCCTTTCAAGCCCCTGTATCCACGGCAACTGCTCCGCCCCCGGCGGGACAGCCTATCATTGCAGGTGTGAGCCTGGCTTCACCGGTGTGAACTGCGAGTCGGAGGTGGACCACTGCCAGCATCACCAGTGTGCAAACGGGGCCACCTGCGTGAGTGACGCCAACGGCTACTCTTGCCGCTGTCCCGGAAATTTCACGGGAAGGTTCTGCAG
Seq A exon
GTGAGCATTAAGCGTTAATCGCGTCCAACTCTGCGACCCCGTGAACTGTCGCCCGCTGGGCTCCTCCGTCCATGGGATTTCCCGCGCAAGAATACTGGAGCTGGTTAGTCATTCCCTTCTCCAGGGGGTCTTCCCGACCCAGAGATCGAACCCGCGTCTCCTCGTTGCAGGCAGATTCTTTATCTTCTGAGCGGCCAGGTGAGCATTACATCCACATAAAGCGTGTCTGGAGGTGTGCTCACGTGCACAGGTACACTCAGTACGCTGTGCTGAGCAGGGGCTCATGGTCACGGCCATGACAGTTCAGTCCTGTGCAGACAGGATCGCATCTGCCAGCACTTTCTACAGGATTTGGACCACATACTTCAAACAAAATGTCTTCTCAGTCACCTCAGTCAGAGTATGTCTCGGGAACTATAGGCCCCGGAGTCGGAGCCTTAAGGCCGCAGGAAATAAATACAGTGACAACCAATACAAGAGCTGAATTCTGGTTTTGCAGGAGGAAGCATGACTCCTACCCCTGAAAGAATGCCCTGGGTCACTTCAGGCAGGTCAACTTTACAAAATTCTGAAAAGGCTATGTTAAAGTTTAGTTTTCAAAATGGGAATTCATGACTCTCAGAATGAGCATGTTTTGATGACTTTGTCATGAATTAATGAGGGAACCAGTAAGATAAAAATCAAAATGTCAAAGGACAATACAATTATATACATAAATATGTACATGTAATATATATGTATATAGGCTTTGGCTCAGTGGTAAAGAATTCGCCTGCCAATGTAGGAGATATGAAAGATGTGGGTTTGATCCCTGGGTTGGGAAGACCCCCTGGAGAAGGGCATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATAGACAGAGGAGCCTGGAGGGCTACAGTCCACGGGGTCATGAAGAGTCAGACACAACTGAAGTGACTAAGCACGCACGTAGGAACATGAGACTATTATTTCCAGCAAGTAATAGTTTCCAGGATGTTGACAAGAATGCCCGGAGTGGGCTGGCAGCCTGGAGACATTACAGTAGTTCAGAGGTGGTGCCTTCACTGGATAAATCTCCTGGTAGACACACACGTAGTCACAGCTACAAGGAGATGTATTTTTGTCTCCATAATATTGTTGTTCAGAGCCTATGAAGGCAAGACACAAGGTTGACTGCTGAGTACTGACATTCCAATAAAACATGACTTTTCATAAGTTAACCTAGTCATTTGTCAACAGGTAAACTGAATGCTTAACAGCAAGAGACATTCAGGATCAAAATTAATAGTACTGCTGTGGTGACTTTGGAAAAGTAAAAGACACATATATGCCTAGGAACCAGTGCTCCAGTGTTTTTTCTGCCTAATTCATCAAAGCCAAGTTTTCAAAGAGTAAAGTTTTGATTCAAAAGTACTTTTTAACGAGATTCAAAAATTGTTTATTAAACATTAAGATGTATACAAAGCTTCCTATTTGCATTGCTAATTGACCTCTTCCAAAGCTGGTTGACATTTTTGGCTCTTTTGAAAAATCCTTATGGTATTTTCTTTTTAAAGTCAAATTGATTAGCTCTTGTGGGAAGAGACACACTTAGCACATACACTGCTTTCTCCATATTAGCTGCAGTCTGCTGAGCAGAACAAAATAAAACTCATTGTATCTTTCTTGAATATTAACTATTTATCTGATTGAATGCACAACACGCACAGTGTAGTTAAGGACCTAGGCACTTTAAAGTCTTTTTAACCAGCCCTGTCACAGCCCTGGATTTTATCTGGTAGTAAAGTTCTGCTTAGCATCTAACAATTTGTACTGGCTTTTATAGGCATTCCTTAATATATAAAGTTGTGTTATTAAACAAAAGAGCCACACTCTGAATTCACATGTACTTTCCACTGAGCGCTGTATACAAACCTCCTGGACAGCATTTGGCTTGCCTTCTGCTAAGTCATGAATTATTGGATGAGGGCAGCAAGTGTTGGCGGGGCAACCGGAGTTCGGCTGTGAGAGGCAGCGGAGAAATCACACGAATGCTTGGGTACTACAGTCCTGGCCTTTCTTTCCTGACGATTATAGAGATGCAATTTTCCTATGGCCTGATGTGATTTATTAGCCAAGCAGCAGCTAATCTAGCCATAGCGAGTTTCTACACTAAATTTATTGCCAACCCCCCGGCACAGATCTTATCTCATGAATGAGCACTGGGTAGAAATGGAAGATGGATAGCCACGCTCCTTACAGCGCCCTCCAGCAGGACCTGTGGACCGAAGAGTGATCGGTGTACAAAACAGCACAGTTAAGCATCTGTAGCTCAGTCCGCCTGAGCACCTCATTAGTTTGGCAAGGACAAGATACGCGGACTTTTCTAAAAAAGTGTTCTTGAACGGAATGAACAAGATGAACCGCAGTGACTGTTGCTTTTTTCTCCCTAG
Seq C2 exon
ATACCTCCGATTACCCTCCACCGTCTGTGGGAATGAGAAGGCCAACCTCACTTGCTACAACGGGGGCAACTGCACGGCGTTCCAGGGAGAAATGAAATGTGCCTGCGGGCCAGGTTTTACGGGGGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008944:ENSBTAT00000033880:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=WD(100=41.4),PF0000822=EGF=WD(100=10.2),PF0000822=EGF=WD(100=10.2),PF0000822=EGF=WD(100=10.2)
A:
NA
C2:
PF0000822=EGF=WD(100=70.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development