DreINT0051768 @ danRer10
Intron Retention
Gene
ENSDARG00000100506 | crb1
Description
crumbs family member 1, photoreceptor morphogenesis associated [Source:ZFIN;Acc:ZDB-GENE-050208-382]
Coordinates
chr22:23484050-23486271:-
Coord C1 exon
chr22:23485353-23486271
Coord A exon
chr22:23484095-23485352
Coord C2 exon
chr22:23484050-23484094
Length
1258 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TTCCCTCTGTCTCACAACAGCAT
3' ss Score
9.12
Exon sequences
Seq C1 exon
GCATTTCAAACGTGACTTTCCAGGAGAACACCACACTTGTATACCAAGGCAATGGGCTGATATCCCGCCATCTGACCAGTATTGTCTTTAATATCCGTACACGTAAGCGCAATGCCATAGTGTTGCATGCAGAGAGTGGATCAGAGTTTGTAACTGTATCTCTTCAAGATGGATTTCTGGTTCTTGAGCTTCTAAGTGGACCTACTACTTCATCCTCATTGTCACCAGTAACCCTGCACAGCCCAAGGGTAGTCGCTGATGGGGAATGGCATGTTATAGAGCTGTTAATGGCCACTCCAGGGTCTAACAGCTCCCACTGGATTATGGTCCCCCTAGATGAAAAAGATGAGCCTACTAAATCAGACTCTATGACCGGAAATCTAGACTTCCTCAGAGAGAGCGTGTACATCATGCTAGGAGGACTAGGCCCTGATTCTGGCTCCAATCTCATTGGTTGCTTGAGTAATGTTGAGATTGGTGGAATCGTGCTTCCGTATTATGGACAGACTGAGGTGAGATTTCCACGCACACAGGAAGAAATGTTCAATAAGATATCCGAGGAGCCTGTTCAAACCGGCTGTTTCGGGGAGGTGGTGTGTGAGCCCAATCCCTGCCTGCATGGAGGCATCTGTGACGATCACTTCAACCTTTTTCACTGCTTCTGTCTTCCTGGCTGGGGCGGTGATCACTGTGAGCTGAATACAAACACCTGCGCCTCCAACCCCTGTCGACATGGATATTGTAGTGTGCAGGACCTCACATACAACTGCACATGTGAGGACGGATACACTGGCACCAACTGTGAGATGAAGGTGGATGCTTGTGCTGGGCACAGGTGTGCTAATGGAGCGACCTGCTTGCGTGGCTTCAACATGTATTCCTGCCTCTGTACCGACAAGTTTACTGGGCCACTTTGCAA
Seq A exon
GTGAGTATTTTCTAATGTGTGTCAAGAAGTTATTTAGGGTTACTTAAGGTTAGGAGTACAAACGATCCCCGACCTAAGATTCCTGTAGTAAAGACTTAAGGCTAGTGCTAGTTTTTAAACTATTATAAAGTATTTCCTATCAGGAAAATTCCGAATAATTCAGAGGCCTTGATTAGATTCCGTAGGTGTCACTTAGGGTTGAAGCTTACCTGATCCAGTGGCTTATCCAGTGGCCTTCCAGAGCCAGATCTGAGGAAACATGTTCTAACTCTTTTAGTGTTAAGGTGTAATTGGCTCCTTCAGTTCCATTGTTGTGATCCGTTAAATCGTGTGCTGCTGAAGAAAGATACAGTTGCCTGCCAACGCATGTGGACTTGACACGTGGGGACTAAAACAAGGGACCCTAAAACACATCTAAGGACCATTGTTTTGTATTTAATCATGAGAGCTCTTCTAGCTTTGCCTAGTAAGTTGTCATCAAAACCTTTACACTGTGATGGTGAGTTTTGCTAGGCAAGGTGGTTTAGGAGTTGCCGTCTAAGTTTAGCAGACTTTGCAGAGTTTGTATTGATTCATAGATGTGATTTGAGGCATCTACTCCTAAGCAATCCACAGGTTCATCCGTTAGGAATAATGTTTGCCCCCTCCGCAGAACATTGAACCAAGTGAAGAGACTTATCTCAGATATATCAACCCGGTGTTAAAAAGCTGTTTCTAAATTCAAGAAGCTAGCGCACTTTTCAAAGAAAAGAGAATGCAAAACAGAAATGTAGACTTTGTACACTAAAACAGGCCACAAACCTCACAGAATGATTCCCATCAAAGCAACTTGAATGAATCAAGACCCCTAAGGGACTGATTTGTTATTGAGGTAATGCAAATCGTATAATTGCTTTTATGGTGTTGTTTATGCTAGTGTGACTGCGGAGATGTGTCTGTTGCCATACGTGTCATTTGAAAGAGGTAATGGTAATAATAGTCTCTGTCGAGAGTGCCCATCCTCCAGTGGTTACGTTAGGCCTTCTGGGTGGCATCTAAGGCAAGTCTGCAGCCATTTATCTCATAAACATGTTTTGTTGCCAGACTTCTTCATAGCACTCCTTTGAAACTGCCTTGCAGGCAGCCGGGAGACATAATAGATCTAGCTTTTCCCCACTGCAGAGTTAGAGAGATCTTTGGTGTAAAGTTTTGCAGCATAAAAAAACAATGACGCTTGCTGTTTGTTTGTCTCTTTCCTGTTCCCTCTGTCTCACAACAG
Seq C2 exon
CATTCAGATTGAAGAGGTTCCGTGGTACGTAGTTGTCAGGAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100506:ENSDART00000166915:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=WD(100=42.7),PF0000822=EGF=WD(100=10.1),PF0000822=EGF=WD(100=9.8),PF0000822=EGF=WD(100=10.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTGAGCCCAATCCCTG
R:
CGTACCACGGAACCTCTTCAA
Band lengths:
355-1613
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]