RnoINT0041824 @ rn6
Intron Retention
Gene
ENSRNOG00000010903 | Crb1
Description
crumbs 1, cell polarity complex component [Source:RGD Symbol;Acc:1309947]
Coordinates
chr13:56311112-56314160:-
Coord C1 exon
chr13:56313254-56314160
Coord A exon
chr13:56311241-56313253
Coord C2 exon
chr13:56311112-56311240
Length
2013 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CATTATTTTTATCTCTCTAGACA
3' ss Score
8.82
Exon sequences
Seq C1 exon
GTATCGCCAATGCTGCTTTCAGCGGATTAAGCAGCGAAATATTGTTCAGAAGCAATGGGAATATTACCAGAGAACTCACCAACATCACATTTGGTTTCAGAACACAGGATACAAATGCGGTGATACTGCATGCAGAAAAAGAACCAGAGTTTCTCAATATTAGCATTCAAGACTCCAGACTACTCTTTCAACTGCGAAGTGGCAACAGCTTTTATACGCTGCATCTGACGGGTTCCCAATTGGTGAATGACGGCGCATGGCACCGAGTGACTTTTTCCATGATAGACCCACGGGCCCAGACCTCCCTGTGGCAGATGGAGGTGGACGACCAGACACCCTTTGTGATAAGTGCAGTTGCTACTGGAAACCTGAACTTTCTGAAGGACAATACTGACATCTATGTGGGTGACCAAGCTGTTGACAATCAGAAAGGCCTGCAGGGCTGTCTGAGCACAGTACAGATAGGAGGGCTATATCTCTCTTACTTTGAAAGTCTTCATGGTTTCACTAGTAAGCCCCAAGAAGAGCAGTTTCTCAAAGTTTCTACAAATGTGGCACTTACTGGCTGTTTGCCACTCAGTGCCTGCCACTCTAGCCCCTGTCTGCATGGAGGAATTTGCGAAGACAGCTACAGCTCTTATCGGTGTGCCTGTCTCCCGGGATGGTCGGGGGCACACTGCGAAATCAACGTTGATGAGTGCTCCTCCAGCCCCTGTGTCCATGGCAACTGCTCGGACGGGGTTGCAGCCTACCACTGCAGGTGTGAGCCTGGCTATACTGGTGGGAACTGTGAAGCGGAGGTAGACACTTGCAAGAGTCATCAGTGTGCCAATGGGGCCACCTGCGTCAGTGGCGCTCAGGGCTACTCTTGCCTCTGTCTTGGAAATTTTACCGGCAGATTTTGCAG
Seq A exon
GTGGGCACAAAGTCGGTGAGGAGCTCAGTCTTTGGGGCTCTGCTCTGAATTTTCCTTGTCAGGCTAGGAGGCTCTCCCCCCTAAATGTCCATCCACATGTGCTAAACAAGACTGGTTTGGAACACTCCCATCACAATTTGATCATGCAAAGGTGCAATTATATATTGTGCAATATCCTGTATCAAGTCTTTTGTATAACTTAGAGAATTATGACACAGCTTAATAAAGAAAATTTAGGGCATACACCAATGCAAAATGGTCGTTATACAATACTCAGCATGTCACTACAAGAATATCTGTTCAACTTAACCCATTTTAAAGAATTTCACATTTGTTCTGAAATTGCAATAGAAGTCTATTGCTCTTGTGACCACGTCATTTTTATGCTATGAAAAATAGAGATTAAACAAAGAATCTTTTAATCCTGTTACTGTTATTGATATTTTGGCGTTACATTTATAAAATAACCGAGTCATTATAGGGAGGTGAAAGGGTAGTTATTAACGAATACCATATGCTAGGACATGGACAAGAATACCTGGAGTGGAGTAAATTGGCAGGCTGTAAGCATCACTTTAATCCACAGGTAGAGCATTTTGGCACACATTACATGCAGCCGTGCCTGGGAGAAGCTGTGTTCATCTTCTGCAGCATCTAATATTGTGCAGAGCTTCAGTGGCAAGGCACAGTGAGAAGTCCTAAGTGTTCAGGTGATTTAATAGACATTATTTCTTGCAAATTAACAGGATCATTTGTCAAGGAGTAACCTGACTGGTTAAAACCAAAACTTGGGGGTACAAATTAAGAGTCTTACACAGTGACCATAGATAAGAAAATATATATGCCCTAGGAATGAGCTCTCTGAGTCTTTTTCTGACTGATCCATCAAAGTCAAGTTAAAGAATAAAGTTCTCAAAAGTCCCTTCTAATGAACTTTTCGGGTGCTATTTATTAAGCCAAGGTGCTGCGTATAAAGCTGGAGATTTGCAATGCAAATGACTCCTTTTGGAGCCGGTTGGCACTCTTAACTCTTTTGAAATGTCCTTATGATATTTTCTTTTTGAAGTAGAGTTATTAGGCTCATTTGAAAAGACACACTCTTTTGAAAAGACACACCTCTACACCATCATCCAGGTGCTAGCTTCAGGGTATAACAGGACGATTGTGAATTTGCTCTCCACTTCCAGAATATTCATTCTGTATCTGATCACACACACACACACACACACACACACGCGCGCGCGCGCGCATGCATGCATGCATATGTGCACACACACATATGACTGAAGGTCCTGAGCAATAATTTTAAATCTGCTCCAAGATCAGCCCTTTCAAGCCTAGGGATTTCTGTCCAGCAGTATTTTCTTAGCTTTTAACAATCTATTCTGCCTTTTATAAGAGTTCTTCAGTGTGTCTAGCTTTGCGGCTATACCAAGAACCCCATGCTGAACTCACATGTAGTCACACTGAGTATTATACACAAACCGCCTGGACAACACTTGGCTGGCGCTGTGCAAAGCTATGAATTATGAGAGAGGGAGCAAGCAAGTCTTGGCAGGGCAACTGTAGTTCAGTTCTGAAAGCCAACAGAGAAATCACACGAGGGCCTGAGTACCAGAGTGGTCTCCTTGTTTTCCTGCCCTTTATAGGGATGCAATTTTCCTATGGCCTCTGTTGATTTATTAGAACAAGCAGCTGCAGTTCTAGCTAGAGTGAGCTCCTTCCCAGACTTGAATTTACGGCCACCCCATGGCGTAGATCTTATCTTATGCACGAAAGCTGCGGAGAAGGAAAGATGGATGACCACGTTGGTTGCAGTGGGCTCCAGCAGGGGCTTTTTGCTGAAGAACGTCGTGTTTTACGATGCAGCACAATCCAGCATTAATTGTTCCTCGGCCTCAGAGCTTAATTAGCCTAACATTGACTACATATATGAACTTTTCAAAAAAAAATTTTTTTCTTGCATGGGATGAACAAGATAAACAGCTGTGGCCATTATTTTTATCTCTCTAG
Seq C2 exon
ACACAGCAGATTACCCTCAACAGTCTGTGGGAACGAGAAGACAAACTTCACTTGCTACAACGGAGGCAGCTGCTCCGTGTTCCAGGAGGACTGGAAATGTGTGTGCCGGCCAGGTTTCACTGGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010903:ENSRNOT00000032122:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=WD(100=41.6),PF0000822=EGF=WD(100=10.2),PF0000822=EGF=WD(100=9.9),PF0000822=EGF=WD(100=10.2)
A:
NA
C2:
PF0000822=EGF=WD(100=70.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]