BtaINT0043707 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014391 | CRB2
Description
crumbs family member 2 [Source:HGNC Symbol;Acc:HGNC:18688]
Coordinates
chr11:94501988-94509386:+
Coord C1 exon
chr11:94501988-94502090
Coord A exon
chr11:94502091-94509062
Coord C2 exon
chr11:94509063-94509386
Length
6972 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CCAGTCTCCTTTCTCTGCAGGGA
3' ss Score
10.7
Exon sequences
Seq C1 exon
ATGGCGCTGGCCTGGCCTGGGACCCGGGACCCCAGGCCCTCGGCCCATCTCCTGCTGCTGCTGCTGCTGCTGCACAGGGCCCCAGTCCTCGCTCTACCGGCTG
Seq A exon
GTGAGTTGGGGTCCCAGGCTTGGGGGGCCTGGGGCTAGGTCTATCCACAAAGCAGACAGCCCAGGCTGTGGGGCTGTCCATGTGGGCGCCAGGCCCGACGGTGGGGTGCACAGGGTGTGCTGCTGTGGGGCGCTGGAGCTCATTCCGTCCAGGGGGACTTTCTGGGGTCCAGAAAAGGGCCAGCTGTGGTCCCTGTGGTCTGGGTAACGGGTGGGCTGTTGTACCCTGTAAGGCGGGGGGTGGGGGGTGTTGGGCTGGGGTGTTCTGCCTGTGAGGCCTGAGTCTGGGGAGTCTGATGTGAGCTGTGTGCAGGTTGTGGACGGTGGGTTGTGGGTGCATTTAAGTTGTGAGGTGGGACAGCTGTCCTGCACGAGCCAGCAGTTGTGTCTGAGGCTCTGTGGGTGTGATGGGCTATATCCCAGTGTGAGTTGTGGGGCATAAGTTATCGAGTGGGATGAACCATCTCTGCTCTTGACATAAGGACGTGGGGTGGGGGCCGCAGACCCCAGCTCAGTGGATTGCGGTGGAGAAGAGGGAAAGAGACGCAGGGTTTCTGCCTGCCTCGCTTTCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGGGACAGGGCTGGGGATGCTCTGGGGTCCCTGGGGGGTGGCTGGGTACTGTTGCCCCCCACACTCCTGGCATTTCCAGATCAAGCTGAAAGGGCTTTGTGAAGCCAGACTGTTCACCAAGAGGTTTTTGCTTTTGTCCAAGTGGATTCACGTGTGCGCGGGCTGGAATTCTTCCTGGGGGGTCTGGGGACGCTTTGTCTTGGTCACTATAGCTACGGGGCCAGGCCTGGGAAGCCTTGCGCAGGAGGGTGGCCTGGCCTCTGCAGCCCAGCCACTGGGGGAGCCCCCACCTCCTCAGAGTCCCCCCCGAGGCCCCTACCTGTGACCTTCTTCAGCCTCTAACAGGGCCCAGCTCACAAAACCTTTGTCTCCGCTCCCCTCTGCCGGGTCCTTGGGGAGGATGAGGCCCCCCAGCCCCCACCGTGTGCAGCAAGGAAACTGAGGTGAAGGGAGGGATGGGGGCTTATAAGCTGGGCCCTGAGGCAAATCAAAAAGGAGCTGGGGCCTGCTCTCTGCTCTCTGCACGAGGGGCACGGAGCCCTGGTCTGGGGATCTGGTGTCTGTCCCCAACCCGACAGTGCACACATATAGATCACACACATGCACACACGCACCTGCACACACATGTGCACACATAAGCCACACGTGTGTGTGCACATGCACCCCCACCCCCACAGCAGCACAGTCAGGTAGCGTGCACCAGGGCACACACCACCACATGAACAGGTGTCCACAGGCACATGTAGAGCCAGCACACATGCACTTGAGCACACACACCCACCTGTGTGTGACACACACGCGTGTGCATTCGTTCGCTAGTGTGCCTTCCCGTGAACCTTGTGGCAGAGTGAACACTGAGTAGACGGGCGCTGCAGAAGGGCACGGACACTGATCCACACACTCACCCCCACCTAGCCCTGCTGGGATCCCCAGGGCCAGCCTTTCCCCCTTCGATTTCAGCACAGGGAGCCCCCTCCCTGGGGATCCCCAGAAAGCCTGGGTGGGGGTGCTACGGGCATGAATATTTCTGGAGACCAGGACCCCAGGGTCTGACTGCCAGGAGGGCAAGGGCAGGAGATGACGTCATTTGAAAAGTAATTTCCATTCCAGAGGGGATGGGGTTCTGGATGCCCTGGGCCTCTGGCTCTGCCGCCCACCCCTACCAGGCCCTGAGCGGGGCCCCTCCGTCTGGGCCCGCTCGGCCACAAAAGCCTGGCTGGTTGCTAGGAGAGCACCAAGCATCTTGGAGCACAGTGGGGCATGTCGGGCTCTCACATCCCTCCCTCCCTGCCGCCTGCTCACCCGGGGAGCCCGGCTGACAAAGGGGTGGCGAGTCCAGCCCTTAAACCCAGCTCCTCCTCCAGCCCGAGCTGCGAGGGGACCTGGAAGACAGAGGCGGGGAGAAGGAGCCACATGCTAGCACCCCAACGTCAGGATTTGTTGGATAGTCACTGCTTGCCCCATGTAAAGATACTGAATAAATAATACACCAGCCTTTATGTGGCAGGCACTGTGCTGCTGGATTTTTGTTGTTCAGTTGCTAAGTCATGGCCAACTCTCTGTGGCCCCCTGGACTGCAGCATGCCAGGCTCCTCTGTCCTTCTCCCCGAATTTGCTCAATTTTTCATGTCCATTGAGTCAGTGATGCCATCCAACCATCTCATCCTCTGCTGCCCCCTTCTCTTCTTGCCATCAATCTTTCCCAGTATCAGGGTCTTTTCCAGTGAGTCAGCTCTTTGAGTCAGGTGGCCAAAGTATTGGAACTTTGGCTTTAGCATCAGTCCTTCCAGTGAATATTCAGTTGATTTCCTTTAGGATGGACTGGTTTGATCTCCTTGCAGTCGAAAGCTACTGGACTAGCATGATGGAATATAATTCTCACAACAGCTCTGTGAGGTCAACTCTGATACCCCCAGTTTACATAGGAGGAAAGCGAGACCCTGAGAGGGTCAGTAACTTGCCCAGAATCACACCTGATGTGTGGCAGGGCCAGGATTTCACAGCCGCCTATGGGACAAGTCTATGGACAGTCACCTCTCTTCTCTGTGCTTCTGTCTAAAGGCAGCAAACCAGCTCATGCTGAGAGCTGCTACAAGAATTCAGCAAGAAAATGCAGTGGTTCTGTAACTTAGGTTTGGCGTGAAACCCCATTTCAAAGGAAATTTTAGACAGAAGCCAGAGGCCACTAACAGTTAAAAGTGGCCTGTTGGGGTGGCAGGTCTGGAAACCCATCTGCTTCGCCTCACCCTCCTTCCAGAAACTGCCTGCCTCCATGGCCCCAGCCCTCTGAGATCGTGGTTTGGAAACACTGGGATTTGCCAATGAGGACAAAGGACAGGCAGTGGATCCATGACGGCTATTGTTGGGATTATCAAAATGCTGCCTTTTAACCTCAGGAGATAAACATTCTTGTAAAAGACTGTCCCGAACTCTCCTCCCTTGTTAGAGTCCTTTAGCCCTTTCCGGATGCTCTGTCTCAGTTGCGCTGCACTGTTTCAGCCCTGCCCTTGGGGCCTCATGCTGCTAGATGGATAGTTTTTTCCCTAGAAGCATGTCTTAAGGGATCTTGGGTGGCTTCTTAGATATATTCTCTTTTTTGCGTTGTCAAGATGAGAAGCTTCACAAAACCCACCTTCAGCAAACACTTCTCATGAGTTGGCAGTTCTCCTAGGCCTGTTACAAGTGCACATAATGTAGGCATTACTAGGCACCAGCAAGGCCTGGAACACCCTGGGATTGCTAGCAGCTGGGTTCAGGGTGGACAGGGAAGACTGCCCTCTCCGCCCAGGCTGATATTGGAAACTGCACTCTTAGGCAAACCTTCTGAGTCTCCAGTCTCTTTCAGTGCCTGGGGGAGGGCGGGCTAGAATGCTCTAAAGTGACAATACGTGGGTGGCAATTTAGAGTTTGCAGGATGGGAGTTTCAGAAGCACTGGGAGATGTGGACTTCTCACAAGGCTGGAAATGATCTGCTGCTTAGTTTTTCGAGGGGTGATCCTGGGCAAGTTAAACAGAAGTTTTCTTAATGGCCCCCATCCTTTCCAGTTTAACTCAAACTCAATAATGTGATAATAGATGTAAGACACGTAGCAGAGCTACACATGCACTCACGAACGGTTCCTGTTACTATAATCCTGTCCTTTGCGCGAAGAAGATTCCTTTCCGGGAGGTGGGTTCTGGGCCTTCCAGGGCAGGGCAGCAGGTCCGAGGGGAGGGGCGAGTGTCCGTTAATCCCTCCCTGGCCAGGTCGTCCCAGGCAGCCTGAGAGGTCAGGAAGGATTTGTAAAGATAAGCACAGGCCCCTCGTCACCCTGGCAACAGGCCACGCCCCTCCAGCCAGACCAGGAAGGCCCCGCCTCTGACCCGCCATCCTCACCTCTCCTCCGCTCAGCCCTGGGCGAGCCTGGCCTCCTGGGCTGGCTCCCTGAAGGCAGAGAGCCTAAGGTCAGTGCTCGTTCCCAAGCCTCAGTGTGCAAAGAACTCCCCAGGGAGCATGCTGCAGTGAAGATTCTTGGCCCCGGAACCCAACAGTTCTGCATCTCTGGGTCTGGAGTGGGGCCCTAGCATCTGTATTCTTAATACAGGCCCTGGGGTGATGCTGGAACCCCCCAGGGTGGAGGCTCTGGAGCAGTGAGACCTGGGTTTGGATTCCAGGCCCTCTTGGGAAACTGTGAAGTCGCTTATCTGTGAGCGTCACTTTCCTCAACTGTGAAAAAGGAATGGTAGCACTGTCTACCCCCTAAGGTAAATGTGAAAACAGAGATTACACAAGAGAGATGGCTGTCCCTCTGGTGCAGACCGCCGCTCCACTGCATGCCTCCTGGGACAGAGGGCTCCCTCCCTCTCTGCCTGCAGGAAAACTCCTTCCTCAGTGGGGCCGGGCTCTGTCTCCTGGGGCCACCTGCTCCTTCGGGGACAAAGCACTTTCCCTGTCCCCCCAGGCGTTGTCTCTCCAGTCTGCTCTGAAATAGAGGGTTCTGAATCGGGGGGCAAAGCTCCAGATTGGGGTGGGATCCCTTAGGATGGTCATGCTTTCCTAGTGGCTCAGCGGTAAAGAATCCTCCTGCCAATGTAGGGTATTCGATCCCTGGGTCGGGAAGATCCCCTGGAGAAGGAAATGGTTACCCACTCCAGTAGTCTTGCCTGGGAAATCCCATGGAGAGAGGAGCCTGGCAGGATACAGTCCATGGGGTCGCGAGAGTCGGGCACGACTGAGTGACTAAACAACAACACCAACAAGAACCCTTGGGTCACACACACGAAGAGTGACACCTTGTCGGGATCAAATGAAGGGCCTGCTGGCACAGGACCCAGGAGACAGGGTTCCTCACAGTGGGAGCTGCGGGTGCTGTGCTGATCCTCCTGAGGGCGCTGGGTCCAGGGACCCAGGTCAAAATGGCCAGAGTTCTCACTGAAGGCTCACTGGTGCCCAGCAGGGCTTCACTCACGTCCCCTCAGTGGCTCCTCACAACACCCACAAGGTGGGCACTGCTCACACCCCACTGTTCACACAAGCTGGTCTGATGCCCATCACAGCATCCTCCCCTCTCCTTCAGACTGTTTAGCCCTGGGGGACAAGGCTGACCAGCCATCATGGTTCAGGGCGGGAAAAAAACAAGCTGCCCATAAGCCCCTCCCAGAGGCCCAGAAGCCCCCTGTCCTCACCCATGCAACCAGGCTTGGGGGAGTGGGGCTGTGGGCAGAGAGGGTCTGTGAACCTCAGCGCTCCAGGTCGTCTTGGCTGGACAGTGTTTCAGACCCTCTGTCCTCCTTGGCACAGGCCCGGCCCTGGGTGGGTGCTTGCCCCAACCCCCTCTTAGTGAGAATCTCCGGGAGTGAGCCCGGGCTGAGTTGTACCACGTGCTTTGGGAGCCGGGGGTGGGGCTGACAGCAGGTCTCTCCCTGGATCATTGGCTGGTACCTCTGTCTCCCTGCCGGTGGACCGCCCTGCCTGCTGGAATGTGGATGACGCCTGAGAGGCTGTCGAGCCTTATCTGGGGGTCTTTGCTGGGGAGGGGAGGGGAGGCACAGGGCTCGAAGCTGTGCTGGGGCCTGGTTAGTGTCTGGATGACAACCTGGGTGGGGGTGGGGCACCTTGGAGCACCAGGTGCGGGGGTGGGGGGTGGAGGGGGGTGGGGGTGTGCCTCCTTCTTGGGGGCCGCTCCCTTCCCCAATCACATACGGAGTTCTTTGAACGTGTGGGCACTTGACTGCCGTCCCAAGGCTTGCAATCTGCCCTCATCCTATCAGGCATGTACGTTATCATCCCTCAGTAGGAGAAACGACTTGCCCGAGGTCTCACAGCTTGTTTTGAACTAGGGTTTGAACCCAGGACTCTCTGCCTTCACAGCTTCTAAGTTCTTACAGGGGCTTCCCTGGTGGCTCAGACAGTAAAGCGTCTGTCTGTAGTGTGGGAGACCCCGGTTCGATCCCTGGGTTGGGAAGATAACCCTGGAGAAGGAAATGGCAATCCACTCCAGCACTCTTGCCTGGAAAATCCCATGGACGGAGGAGCCTGGTAGGCCACAGTCCATGGGGTCGCTTTCACTTTGGGCTTCCCTGGTGGCTCAGACGGTCTTACACCAGCTTGACACTGACAGGCCCTTAGCAAAGGAGGGCGGGAGGGAGGCGGGCCGCAGATCAGGAGGTGACCCTCTAACAGAGGGAGCTCTGCCTCGTGGAGACGTGTCCAGTGGCTGGAGCTGGGAGTTTGGTCAGCATGTCTCACTACCTGCCCTCTACCCTGTGACCGCGGCCAGTGCGGTCGCTCACATTTACTGATGGCAGATCCGGTGAGAAGTTCAGGGAGGGGAAGCAGGGTGGAGCGGGGAGAGGGGCCTTTGAAGTCCTCCATCTCCAGTTTCACGTAGGGATGGAATTACCAGACCCCCAGTGGGAGTGGCGGAGTGGGCAGTGGGAGGCCAGGGACCCCTCCCTAGGTGGGGCTGGAGCATTCGGACGGACGTTGAAGGCTGAGCCAGGACTCAGGCCAGAGACCTCACTTTCACACTTGAGCCTGGACCCGCTCTCCTGTAAAGTGGGCCCAATAGCGCCTGCCTGCAAGGGGTGCTGTGGGGATGTGCGGGCACTGGAGCACGGAGCTCACAGGGTCAGGGGGCGTCTGCTCACTAATCCTGCCTGGGGAGTCAGGCAGCCTGGGTCCTCCTTTACAGAGGAGACACTCCCCAAACCATTCCCAGATCTGGGTGCCTGTTGGGACCTTGTCTGTAGACCCCTTGGCCCTCTCTCCTGAGTCCCGACGACCTCCACTGCTCACCAACTCTGGGATCTGGGGATGGGCCTGAGTGTGGGGAGAGAGGTATCCCAGCAGCCCCTGTCCACCCTGCCCAGCCAGTCTCCTTTCTCTGCAG
Seq C2 exon
GGACGGTGCCTTCAGAGACCCCGGGTGCCTGCGCCTCAGACCCATGCGCTCCAGGGACCAAGTGCCAGGCTACAGAGAACGCTGGCTACAGCTGCGTGCCCCTGGAGCCCCGGGGCTGTGCCAGTCAGCCATGCCACCACGGCGCTCTGTGTGTGCCCCAGGGCCCAGGGCCCGATGACTTCCGCTGCTACTGTGTGCCGGGATTCCAGGGTCCACACTGTGAGCTGGACATCGATGAGTGTGCGTCCCGGCCCTGCCACCATGGGGCCACCTGCCGCAACCTGGCGGATCGTTACGAGTGCCACTGCCCGCTCGGCTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014391:ENSBTAT00000043337:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000822=EGF=WD(100=31.2),PF0000822=EGF=PU(90.3=25.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development