HsaINT0041234 @ hg19
Intron Retention
Gene
ENSG00000148204 | CRB2
Description
crumbs homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:18688]
Coordinates
chr9:126118448-126125467:+
Coord C1 exon
chr9:126118448-126118633
Coord A exon
chr9:126118634-126125143
Coord C2 exon
chr9:126125144-126125467
Length
6510 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CCAGTTTCTTCTTTCTACAGGGA
3' ss Score
9.73
Exon sequences
Seq C1 exon
TAGTGCTGGTTGGAGGGACGAGGGGGGTGCGGAGCCAGCCAGGCCGCCCTCCCGTTCTCACAGCAGCCGAGCAGAGCGCAGAGCGGGCTGCCATGGCGCTGGCCAGGCCTGGGACCCCGGACCCCCAGGCCCTGGCCTCTGTCCTGCTACTGCTGCTCTGGGCCCCTGCCCTTTCCCTCCTGGCTG
Seq A exon
GTGAGTTGGGGCCCATGTCTGGAGGGGCCTGGGAGAGGGTCTGTCCCCCAAGACAGATACCCCAAGCCTTGGCTGCTGGGGTGGTGGGTGGGCTGGTCCGCGTGGGTGCAGGCCTGAGCTGTGGGGTGCACAGGAGTGCGCGGCTGTGGCCCCCAGACTCTGTGGGGCTCCACGGAGGTGAGTGTGTTCTGAGGCTCGGGGCTGTTTCATGTTGAGGGGGGTTGTAAGTTTCGGGGTTGGGGGATCGGGGGCTGGGCATGATTTGGGGGAGCTGATGCGGGTGAGGGATGGGGTGCGTGTTTTGGGAGGTGCTGTGTTGCATCCTGTAAAGGGCTGGGGGACTTCTGGGTTTCTAGGGGCTGAGTTTGGGGAGTTGCAGGTGGCATAAGCCTCACCCCAGAGCTTGTTCTGTGTCGCATGCTGGGTTGTGGGGCACAGGTTGTGGGTGTGTTAGAGTTGGGAGGTGGATGAGCTGTCTGGGGTGAGCCGTGAGTTGTGTCCGAGGAGTTGGGTGTGGTGAGCTGTGTCCTAGCACACGCTGTGGGGTGTAGGTTGTCCAGGGTTGAACTAGGTCTTTGCTCTCAACATGAGGGGTGTGGGATGTGCACAGCCGACCCCAACTCGGGACTGAGTGGAGAAGCGTGAGGGAGACTCAGGGAGCTGGGTGCCTGCCCGCACCCCTCCATTTGTGCGGTAGCCCTGCCTGTGCTGAGGGCTGCTGGGGATGCTCTGGGTCCCTGTGGGGTGGCTGGGGATTTGGGAACATGTGTGTGTCCCCTGCTGCCCCCTCCCCAGCATTCCAAGGCCAATCTGAAAGGGCTCCCTGAAGCCAGACCACATTTGCCAAGCCCTTTTTGCTTTTGTCCAAGCTCTCGGAGCCTGGAATTCCTCCTGGGGGGTCCAAGGGAACGCTTGGTGTTAGTTACTATAGTTACAGGGGCCGGGCCTGGGAAGTCCCCTGCCCCCACCACCACAGGCTGGGGAGGGAGCCAAGGAGGGCCTGGGCTCTCCTGAGGCTGGGGGAGCCCTCCCTGCCCCAGAGCTCCACAGGCTGTAGGGTGTGGGGGCCAAGTGTCTCCCAGTCCCACCTGGGGACCCTCATGTTTCCCGCACTCACAAAGCTTTCATTTCCTATCCTCTCTATGGGGCCCTAGGGAGGATGAGGACCCCATTTTGCAGTGAAGGAAACCAAGGCTCAGAGAGGGACGGGGACTTATGAGCTGGGCTCTGCTGGCAGGCGACTTGGGCTCCATAGAGGGGTGGGGCATGGTGGCGGGGGGCGGGGTGGCTGCTCCTCTCTGTTCTCTGCATACAAAGCACGTGAGATCCCGGTCTGTGGATCGGTGCTCTGTCCCCTGCCCTGTGATGCTCACACACCCACACTCCGCACACCTGTGTGGCATGCCCAAGGGCACACAGCACCACAGGGACAGGTGCTACAGACACATGTGGATCTACCAGCACATGCACCTACCTACACACATGGCATGTGCCTGCACACCAATGTGCACACCCCAACACGCACATGTGGACATGTGTGCATTCACACTCAGTGTGCACTCACAGGGGACCTGGAGGCACAGAGTGGATGGAGGCTGTGGGGGGTCTGGACACTGGTGTGTACACTCAACCCATCAGGCCTGCTGGGTTGCCCAGGGGCAGCCTTTCCTCTGCCATTTCTGTGCTGGGAGCGCCATCCCTGGGGATCCCTAAAAGTTGGTGGGGTACACTGCAGGCATGACCATTTCTGCATGCTGGTACCCTAGACTGCCTGCCGGGAGGGGAGGGATTGGGGATTTTGTCACTTGAAAACCAATTTCCATCCTGGAGGGGATGGGGGCTTCTGGAGGCCATGGGCCCCTGGCTTTTCTCCCCACCCCTGCCAGGCCCTGAGCTGGGCCTCTCCATCCTGGGCCCAATTTGCCACAAAGGCCCGGCTGGTTGCCATGGAGAGGACCAAGCATCTTGGAGTACAATGGGGCACGTTGGGCTCTCATATCCACCCTCCCTTCCCCAAACACCCAGGGAGCCCAGCAGACAAAGGGGCAGTGAGTCCAGGCCCCAAGTCCGGCCCCTCCTCCAGCCAGAAGGGGGTGGGGGCCTGCAGGACAGAAGCAGAGATGGAGCAGAAAGCCACACACATTCAACCCAATGTCAGGATCCTTTGGACAGTGGGTGTCTGCCTCAAGTAAAGAATTGTTAATGAGTAAGATCAGCCACTCCATGGCAGGCACTGTGCTATTATTAACGAGGTCTAATTTAATTCTCCCAACAGCCTATGAAGTCAGCTCTGATACCCCTAGTTTACAGAGGAGGTAAACGAGGCCCAGAGATGGCCAGTCCCAGAGCCAGGAAGCCCCAGAGCCAGTGCTGGGATTTCACAGTACACTGTGCTACTTGCCTAGGCAAAGTCACGTCTCTTCTCTGTCTCTACAAAACGAGGACAGACTGGCTTACTCCGAGCGCTGGTATAAGGATTGGAAGAGAATGCAGTGAGCGGTTCCCCACCCCAGGTTTTGGCATGGAACCCCCAATTTCAAGGGAAATTTTAGATGGAAGCCCATGAATAGTTAATAGTAAAATTGTTAAAAGTGGCCTGTTTGGGTGGCAGGTGGGGAACCCCACCTGCTCTGTCTCCCCCTCACTTCAGGAGGTAACTCCCTGGAACTGTGCTCTGAGCCCAAACTCTCAAGGGTTGGTCAGTGCCAGGCACAGGGTAGGTGCTCCGTCCCTGACAGCTATTGTTGCAATTACTGTTATCAAAATTATGTCTTTTAACCTCAGAAGGTAAACATTTTTGAAAAAGAGTATGCCAAATTATTCTGCCCAAAAGAGAATTTCACCCTTTCCTGATGACTGAGTGAGTGTCTGCAAGCCTCCATGGTTATTCAGCCCTACCCTTGTAGGGTAGAGCCTTGGGGCCCAGGGATATTAGATGAACAATTTCTTCCCCTATGCTAGAAGTTCCCACACCTTATGAGATCTTAGGTCGCTTCTTAGAAATATTCTGTCTCTTGATTTGTTGGGACAGGAAGCTTCCCCAGTAAATGCTTCTTTTTTTGTTTGTGGTTTTTCGTTTTTGTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTAAGAAAGGGTCTCACCCTGTTGCCCTGGCTGCAGTGCAGTGGCAAAATCATAGCCCACTGTAGCCTCGACACCCTGGGCTCAAGCCATCCTCCCACCTCAGCCTCCCAAGCAGCTGGGACTACAGGGACCCACCCCATGCTTGGCTTATTTCGTTTTGTTTTCATAGAGCCAGCGTCTCACTATGTTTGCACAGGCTGGTCTTGAGCTCCTGGCCTGAAGTGATCCTCCCACCTCAGCTTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCACCTGGCTTCAGTAAAACACTTCTCATCAGTTGTTGGCTGTTATAAACAGGCCCATTCTAAGTGCATGAAAAGTAGGAGTTACTAATGAGTGAGGCCTGAGACACAGTGGGATTACTGACAGCTGGGTTCTGGATAGACGGGGAAGATTGCCTGCTCTGCCCAGGCTGATATTGGAAGCTGTATTCCTGTGAAAACCTTTAGAGATTTTTTTTTTTTCCTGGGTGAGGCAGCTGTAATGTACTAAAGCAACAATATGTGAGTGGCAATTTAGGGTTTGTAAAGTGAAAATTTCACATGCATTGGGAGATGTGGACCTCTGGGAAATCAGGAGCTGATCTGATTCTTCGTCTCAACCTGGGCAAAATTATCAACCTCTCTGAGTTACAAAAACAGAAATTTTCTTAATGGCACCCACCTTTTCTGGTCTGAATCAAGTATAACAATGTAATAATAGATGCACAGGCCCAAGCACATAGTACACACTCAGTAAACAGCTGGGTCCTCCTGCCCCTCCCCAGGACAGGGCAGCAGGTCGAAGGGGAGGGGCGGGCGTCGGTTAATCCCTCCCTGCCAGGTCGGCCCAGGCAGCCTGAGGTCAGGAGGGATTTGTAAAGATAAGCACAGGCCCCTCGTTGCCCTGGCAACAGGCCCCGCCCCTCCAGCCTGGCCCGGGAAGGGGGGACAGCCCCTCCTCCGCCCTGCTGCCCTCCACACCCCGCCCCTCCTTGCCTCTCCTGTCTGGCCTGGGCTATCGTGGCCTCCTAGGCTCACTCCTGGAAGACAGAGACAACCTGAGGTCAGCGGTTCCCACACCTAAAAGTGAAAGGAATCCCCCAGGAGCAGGTTGCGATGCAGATTCTCAGGCTCAGGGCCCAGTGGTTCTAAATTTGGGGTCTGGAGTGGGTTCCAGGAATCTGTATTCTTAATGTGGGCCCGTGATTCCGGGAAGCTTGGAGTGAGGCCCTGGGTTTGGATTCCAGCCTCCCTTGGGCTGTGGACTGTGAGGCTGCTTCGAGTCTCCCTTTCCTGAGCTGTAAAACAGGCATCATAATCCTATCCACCTCGGAGGTAAATGCCAAGATCAACTGAGATGACACATGAAAGATGGCTGTCCCTCCCAGGCAGGACTGTGGCACTATTGCATGCCTCCCAGGACGGGCAGCTCCTTCCCTTCCTGCCTGGCTCTGACTGGAGAAATTCCTTCCTCCCATGGGGTTGGACTCTGTCTCCCGGGCTCTGTCATTTAGAGCCCATCTGCTCCCATGGTCCTGGGAAGATCCCTTGTGACAAGGCACCTCCCCCGCCCCCCAGGATCCTTTCCCCGGTGCTGCCTCCCCAGCGTGGTCCCAGCTGCTCTGAGATAGGGGGCAAAGCTTCAGATTGGATGGGCGGGGAGGGGGGGGGGTTCCTTGCACTGCACAGGTGAGGGACAGTGCTCTGTGGGAATTAAGTGAGGGACCTGTTGGCACAGGCGCTGGCAGCCGGGGCCCTTTACCATGGGTTATGAGTGCTGCACCCTCCTGAGCAGTGCTGGCCACACCCAGTCCCAGGGCTGTGCCCTGCATCACCTTGGTGAATCCTTTCAACACCTCCATGAGATGGGCACTTTTTGCACCCCAGATACAAACCAGGACTGCCCGATGCCCCAAACCTGTGCCCTTTCCTGGGGGAGCTGGAAGGATGCGGGTCAGGCCACAGGACAGCCCTGCCTGGAATGCGGATGACGCCTGAGAGGCTGCCAGCCTTATCTGGGGGGCTTCACCAGAGTGGGGGAGGGAAGGGTGCAGGGTCTGAGCTGTTCTGGGGTCTGGTGAGTGTCTAGATGACAACCTGGGTGGGGGAGGGGCACCTTTGGGAGCTCCGGATGGGGGTGGGGGGAGGAATGGAGGCTGTGTCTTCTGGAGGCTCTCCTCCCCCATCCCTTACCGAGTTGTTACCAAAAGCAGCCCTTGACTGCGGTGCTGGGGAGCTGAATAGTTCAGCATTTGATGAGGGGATTCTTTTATGATCTAATTTTCAGACTGGGAAACGGAGGCTCTGTAGGAGAAATGACTTACCCAGGGTCTCATAGCTAGGAACTTTCTGAGCTGAAATTGAACCCAGGTCTGTTTCACTTCAAAGCTCAAGTTCTCACCTGGGCATTGTGGTGACAAGGCTCTCAGGAAGGCAGGAGGAGAGGAAGGGGGATGAGGATCTCTGGGCGTGGCTTCCAAGCCGGTTGGTGACCCTCTGTTAGAGCCCCGGTGCTGGAAGCATCATGGTGGCCAGGGGCAGGTGTCCGTGAGCCATCTCAATACCTGCTCTGTACCATGCGACCTTGGCCAGGCCGGCCACTCAGGTGTTTGCTGATGGGGGATGAAATTAGGGCCAGGGACCCTCTAGAAGTTCCTAGGCCAGTGGCTGGCAGGGGGTGGGTAGTGATGTGGAGAAGGGGTAGGAATGAGACCAGCGGAGCACACGATCCCTGCTTTTGAAGTTGTCCACCCATCCTCCAGAGGTTGAGGTCGGGCCCATCTCCAGTTTCACCCAGGGATGGAGTTACCAGACCCCTGGCAGAAGAGGTGGAGGGGGCAGTGGGAGGAGCCTCACCCTCTGGGGCCTCCTTGGATGGATGGGGCCTGCAGGAGGGAGACCCCTCCCCAGGTGGAGCTGAAATAATCCAGATAGACCTTGAAGCCTGTCCCAGCGAACACTAACTTGCTGTGTGAAGTGGACAGGGCTGGGCAGGCTCAGCAAGCCTTCACTTTCTTTCCTGGGCCTCCTTTTGCTGTCTGGTGCAATGGGCATGACGGATACTGCCTCAAAGGGGGACTGCAGGGACAAGACAGTGGAGGGAAGCTCACGGGGCTCAGGGAACCTCTGCTCACTAATCCTGCCCAGAAGCCAGACATCCTTGGTGCTGTTTCTCTGCTATATAGGCTCTCCTAAAACCGTTCCCAGTTCTGGGTGCAGATGTGTGCAGCTTACTGGGACCTGGCTTGCAGACCCCTGGCCCTCTGTCCATACTGTGCATGCAGAGACCCACGTTGCTTTTGGGGTCTGGGGTGGGCCTGAGAGGGTGGGGAGGAGATTGTCCTTGTAACCTCTGCCCACCCTGCCCAGCCAGTTTCTTCTTTCTACAG
Seq C2 exon
GGACGGTGCCTTCAGAGCCCCCCAGTGCCTGTGCCTCAGACCCGTGCGCTCCAGGGACCGAGTGCCAGGCTACCGAGAGTGGTGGCTATACCTGTGGGCCCATGGAGCCCCGGGGCTGTGCCACCCAGCCATGCCACCACGGCGCTCTGTGTGTGCCCCAGGGTCCAGATCCCACCGGCTTCCGCTGCTACTGCGTGCCGGGTTTCCAGGGCCCACGCTGCGAGCTGGACATCGATGAGTGTGCATCCCGGCCGTGCCACCATGGGGCCACCTGCCGCAACCTGGCCGATCGCTACGAGTGCCATTGCCCCCTTGGCTATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148204-CRB2:NM_173689:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000822=EGF=WD(100=31.2),PF0000822=EGF=PU(90.3=25.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)