MmuINT0042036 @ mm10
Intron Retention
Gene
ENSMUSG00000035403 | Crb2
Description
crumbs family member 2 [Source:MGI Symbol;Acc:MGI:2679260]
Coordinates
chr2:37776249-37783523:+
Coord C1 exon
chr2:37776249-37776446
Coord A exon
chr2:37776447-37783199
Coord C2 exon
chr2:37783200-37783523
Length
6753 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
AGTTGCTTTCTGTTTTACAGGGC
3' ss Score
9.79
Exon sequences
Seq C1 exon
AGTGCTGGTTGGAGGGACGCAGGGGCGCGGAGCCCGCCGAGCAGAGGGTTCCCGCAGGCAGGCAGGCAGGCAGGCAGGCAGAGCCGGCTGCCATGGCGCTGGTGGGGCCTAGGATTTGGGGCCCTAGACGAGATATTTACCCCCTGTTGCTGCTACTGCTACTGCTGCTGCTGCTGCTGCTGCCTTGGGTCCCGGCTG
Seq A exon
GTGAGTGTGGCTGGGCCTGGGGGTGAGCGTGGCTGGGCTGGCCTGAGAGAATGGTGATGCTAGAGGCAAGAGTGTCCCGGGCCCTAGACAGTGTGGGGACAGTGCGGGTGTCTTGGGACTCACTTGGAGAGCTCGGAGTGTTCTGGAGGCTTCAGACTGAGGAGTCTATGCGGTGGGGCCAGGAGGATGAGGGCTGGTGTGGTCTGTAGAAGCCAGTCTGGGAGAGCTGGTGTGGTGTGGCGTAGTGTGTTGAGGGAAAAGCTGGGAATCTTGGTGTGAGGAGCCACTTAGGGAAAGCGTGCCGGGATAGATGGAAATGCGTGAATTGGAGAAGTTTCAGCAAACTCAGGCAATCTCCATAGAGTCTGCCGGAGTCACGTGTTGACCTGGGATGCAGGTGACATGTAAAGTTGCCCGGTGGGTGGACGTTCTGTTTGAGGGGATTGATTGTTGAGAGTTGTGTCCTCGCTGAACTAGCTGTAAGTTGTCCGGCATGTTCAACTGGCCTTTCCTGGCAACGGGAGGTGTGGGTGTGGGTGGGGCTAGATTAAGATAGGGGAGGGGGAAGAGAACCAGGGTTAGGGGAGAGCTTGCCCTCATTGCTCCCTTCTATGGGTCCTCTGCCAGCACTTGAGGGGCAACCGGTAGAGCTGTTCCGGGTCTTTGGAATGGCTAGGGATTCGGGATCATACGTGTGTGTCCCTGCAGCAGGTTTCTGGCATTCCTCAACTATGCTGGAAGGGCTCCCTGAAGCCAGCCCAGGCAGCCAGTACATTGGCTTTGTCCAAGTGCATTCAACACTGAGCCTGGAATTCCTACTGGGGGGTCTGGAGGACGCTTTGGCTTGGTCACTATAGTTACGAGGGCAGTAGGGAGGGCCCGGCTTCCCCTGCAATAGGTGAACCCCACCAGTGGCATTCCCCCTGCCTGCCTACAAAGCCGTTATTGCCTCTTCTCTGTGGAAAGGGGGAGGATGAGGACCCTGGGTACAGCGAGGACCTGTTTTAGGGAGGAAACCAAATGAAGGTTGAGGAGGGAAGGGACCTAGAAGAAGCTGGTACCTGAGGCAAATGAGGGTGGAGAAACCAGGCAACTCCAGGCTGTCTGTACATTAGGGCGTGAGGTTCTGGGCTGTGCACTTTGGATCTGTTCCACATGCAGTACACAGATGCCCATGGCAGCTGCACAGATGTGTGGCAGGGACTAGGGTACATACTACAACAGGACAGGTGTCCACAGGCACATGCCAGGTCTCCCCTGTGAGCTCACTGGTGAACTTGCTAATGAACCTACTGTGTATCATCATATACATAGCACATGGCTGCATTCACCCACTAGGTACACACCAGCAGGCCTGCATTGACTTATATGCACTTACACACATATGGTCTGTGAGATTGGCAAACAGTGGTGTATATTTCCCCAGAACTCCAACAGGCTCTCAGGGGCCATTGCCCCGGGAATTCTGTGTGCAGAGTCCATCTCTGGGGATCCCTGAAGCTAGAGTTGGGGGCTCTACAAGCACGATTACCCAGAGCTGACTGAGCAAAGGGCGGTGCTAGGGACTTTGTGACTTGAAAGCTAATTTCCATCCCAGAGGAGATGAAAGTTCTGGACCAGACCCGATGCCCTCCCTGCCAGGCTCTGAGCTGGGCCCCTCCATCCCAGCCACTCCACAGCAGAGGATTGCTGGTTGCTATGGAGAGGATAAGGCATCTTGGACTACAATGGAACATGTCGAGTTGTTCCCACCCCCACCCCTTCCCTGAACACCCAGGGAGTGCAGTGCACAAAGGGGCAGCCAGTCTTCCCCAAACCTGGCCCCTCCTCCAACTTAAGAGGTGGGGCGGTAGGAGAGCAACAGGGACTCTGTATACTTCTAAATAATGTGGGGTCTGCTGGCTACTGGGCTCCAGGGAAGGTTTGCTGATGCGTGATCCACTGTGTAGAGAGATTTTAACCCTCCCGGCATCCAGGGAAGCTGGCTTTCTACCTCTCTGTTTACAGAACAGTTAGGCAAAGTCCAGAGAAGATCCCAACTTGTTTAAGGTCACAAGAGCAGCATGCTGCAGCAGGGCCTGGACCACAGCAGGAGTGGTACTCTAGGTGGTTGGTTACAGCTCTTCCTTGTACCTCTGTTAAATGAGTCATCATTCGTTCCAAGGATTGTTTCCAGACTAAATGCACCAGTGATCTGAATCCGTAATGTAGGGGATGGGCAGGACCCCCTCAACCTCACGGAGACTGTATTGTTGTGTATTATTATTATTATTATTATTATTAGTGTGAGTGCGTGTGAGCATTTGCGCACACACAAACCCAAGTGTGGAGGCCAGAGGGACTGTGGAGCAAGTTCCCCCCTTCCACCTTTACGTGGGTCCTGAGGGTCAGACTCAGGTCATCAGCTTCCACAGCAAGTGCCAAGAGCTGCAGAGACATCTTATTAGTCCTCAAAAATAAATAAATAAATGAATAAATAAATAAATAAATAAATAAATAAAAAATATAATTTTAGACGGAAGCATTAGGGGAACTATTTTTTTTTTTTGTTTTTTGTTTTTTTTGTTTGTTTTGTTTTTTTTTTTCGAGACAGGGTTTCTCTGTATAGCCGTGGCTGTTCTGGAACTCACTCTGTAGACCAGGCTGGCTTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCGGCAGGGGAACTGTTCACAGCACAAGTGGCCTCCCTGTATGTCTTCTCCTCACTCAGAGCTTGGTGGCTAGGGACTAGCAATCCCAGTACTGTACCATCGTGGGCACTGCATCAGACAGAGCACCTATGCTTGCCATGACTGTTATTCAGTTATGCCTTTTGGCCTCAGGGATGAGTATCTCTGAAAGTATGTCTAGGCTTCTCGGCCTTCCGGGGTGTCTTTCCTTTTTCCTGACAAGTGGATGTTGAGTGTCAATGACCCTTTACTGCACTGCACCCCCTGGGGTCCTGTGTTGGATAGTTTTATGCCAACTTGACACAGGCTAGAGTCATCAGAGGGGAGGGAGCCTCTGGGATTTTGAGAAAATGTTTCTGTAAGATTGGGCTGTAGACAAACTGTAGAGCACTTTCTTGATTGGTGATTGGTGAGGGGAGGGCCCCAGCCCATCATGGGTGGTGTCACCCCTGGGCTGGTGGTCCTGAGTTTTATAAGAAAGCAGGCTGAGCCAACTATGGGAAGCAAGCCGTAAGCAGCACCCCTCCATGGCTTCTGCCCCCTGTTTGAATTTCTGTCCTGACTTCTTCCAGTGATGAACAGTCATGTGGAAATGTGAGCCAAATACACACCCTTTCCTCCCCAGTTTGCTTTTCATTGTGGTGCTTCATTGCAGCAAAACCAGCCCGAAGCTGCTGAGGCACAGAGAACCTGAGGAAACTCAGGCACGAACTGGCTCAGGTAGAGTAGGAGTTCCTAAGCTGGGACTAATGCAGTGGTATGCCAGCTGCCAGGCTCAGGGCAGAGAGGGTGCTGCTCTCCCAGGGTAACCTCAACCTTTCCCTCATGCTGGGCATGCAACCCAGCGCTTTCTCATAAGCTAGGCAAGTGCGGCACCAAGGAGACCATTCCTCAGACCTCTAAGACTTCCTGGTGAGGGGAAGGAGGGCTGGGGGCATATTAGGTTGACAATTCTTTGGCACACAATTTCATATGCTCCTGAAGATCCAAGTTTGCAGGCGCTTTATGATAGGAAGCAGTTAGTCTTCTTAAAAGTTTCCCTTTTCTAGCGTGAACCAAATATACCAAGATGGCAAAAGATGCCTGGCCCTAGTACACAGCGGCTCACGAGGTGACTGCAGGCAATGACTGCATGCGTCTGTTTCCCGCCTGCTCTCCTCAGGGTGGGGCAGGGAGCAGGTCTAAGGAAAGGGCCAGCATCCTGTGTCTGTGTCTGTTAATCTCTCCTCTGCCAGGTCAGCCCAGGCAGTCTGAGAGGTCAGGAGGGATTTGTAAAGATAAGCAGTGGCCCCTTGTTGCCCTGGTGACAAGGCTCCGCCCCTACAGCTAGTCCCTAGGGAGAGCTCCTCCCCTCCCCTGCCCAATCGGCCTCCTGGGTTTACTGTAGGTCCCTCCGGACACCCTGGAGTGCGATGGGACTGGAAGTGATGAGTCCCTTGAGTTGTAAAACGGCAGATAAAACTGCTGACATATGACGGTCCTGGCTGCGCAGGCTCTGGGCTTGTTTGTACCCTCCAGCTCTGCTCCTCTCGAGACAGCCTTTCTAACTGTGGGCTGGGCTCTGCCTCGCAGGGATTTCTCACAGTAACAGCCCTCTGCTGGGCTCTGGGAGGACCATAGAAGGGCAAAGCTTCCTTCCCCCGATGCTGTGGCCACTAATATAGTGGGCTCAAAGCTAGGGGCCAAACTCCAGGTTGTGTTGAGGGATTCCTTGGGCCACAGAGATAAATAAGAATCTGTAATTTGATGGGATTACAGTGGGAGCTGTTGGCATGGGGCCAGTGTTCAGGCGCTTTATAAGAGGAATTATAACCACTGTCCTCTTGGGGCCTTTTGGGCCAAGGGCCTCTGACTATCACTGCCTCTCCAGGGGGCTCTCTAGATGTCAAGGCATCATACACATCATTTTGGGGCTCCTCACAACACTGAATCTGTCTGATGCTTCAAACCATGCTTTTTCCTGAAGGTGTTCCATCCACTTCCTGCCGCAGGTCCCGACCGTCTTTCCATCTCCCATACCCTTCTTCTTACCCTAGGGCATCTATTCTGGGACACCCAGACTTCCTTGTCTGTCCAGTCACAGAAGCAGAAGGCCCCACCTATTCTGGACAATTCCAACCCAAATGTTCAGGCTTGGCAGAGGGTTGGGACAGGTGTGAGCCAAGGGGTCTCTTAACCAGAAACAATCTCAGACTCCAGAACTTGATCCCCTATTTGCCTCTGGTAGATGCTAGGTCCTTGTGTGGAAGGAAGGACCCTGGACACTTGAGATGGCACTACACAGCCATGTCTCCCTGGGTCTGTGGCTTACTGTCCTCCATCTTGCTTGGTCTGCTGAGGAGTTTGGGAATCTGGCCGGCAGACGCCCTGCTGCATGGAATGTGGATGACGCCTGAGAGGCTGCCAACCTTATCTGGAGGGGAGGGGGTCTTCATGGTCTGGGGGAAGGGAAGGTGCAGGGCCTGATGCTGCTCACTCTCAGGTCTGGTTAGTGTCTGCATGACAACTTGGGGGGAGGGTAGGTCCTGGGACTCCAGGTGGTGGGTAGAAGGGCTCCTCTCCCTCACATTTGTGTCTGGCACCTGAGGCTTTCAATCCTTCTTTTACCAAAAGGAAGAGGGTGTTTGGTAGAGGCCTCCCACCCAAGGTCTCTGAGCTGGGTTTGGACTCAGGCCTAATAGTGACAAGGTTTTCAAACTGGGATGGCAGGAAGGAACAAGACTCACTGGATTTGTCTTCTAGTCAACCCCGGGTGCTCCAAGTGTGTAGACCCTGGTCAGGTATGTAGGTTCAAGTCACTATACCTGCTTTGCTTCAGGTATTTGCTTGTGGGGGATGGTGTGAGTGTAGGGATCCTCTGGAAGTCCTCAGGCAAGCTGGCAAGAAGGAGGGACCAGGATGGGTTTAGGAGTGAGAGAGGCTGAGCCAGGTCCTGCCTTTGAAGTCGCCCATTCTTTTCCCGGGGCTGAGATCAGAGTCTCAGGTTTCAGTGAGGGATGGAGTTACCAGACCCCCAGCGGGGGGTTGAGGGGGATGGAAGCTACCCCCTCCTTAGATCCTCCACCCCACTTCAGGCTGCTGAGGGGACACAGGCCTGTAGAATGGAAAGGCCTGGCGAGCAGCGGGAACAACCTGGCATTGCCGGCTATTCCTTGTTAATTTATCCTGTGATGTCAGCACGTCTTTACTTCCTTGAGCCTCTATTGCTTGTCTGTAAAGAGAATATAGGACAGTCCAAGCCTCCTAAGGGTACTGCAGGAGGGTTACCAGAGAGCTTGGGCAGTATTTGTTAGGAAATACTGTCACAGGGGAACCACTCACTCAGTCCACTATCTCTGCTCTATAGATACAACAACAACAACAACAACAACAACAACAAAAATGTCCTCAAGGGCTCAGGTTGTAGCCCAGTCCAGAAAATGGTTGCCTTTCACCAAGGAAACCCTGGGCTTGATTCTCCAGTACTCCATAGGCTTGGATTGGTAGGGTATGCCTATAATCCTGACACTTGGGAGCTGAAGCAGGAGGATCACAAGTTTAAGGTCATCCTTGGATATATAACAAGTATATCTTGATCCAAGATCAGCTTGGACTATAAGATAGTCCTCAAAAATAAGCACAAAAATAAGTAAATAAATCCTCCTCGGGCTGGCAAGATGGCTCAGCGGGTAAGAGCACTGACTGCTCTTCCAAAGGTTCTGAGTTTGAATCCCAGCAACCACGTGGTGGCTCACAACCAACCACCCGTAATGAGATCTTGAGATCTGATGCCCTCTTCTGGTGTGTCTGAAGTCAGCTACAGTGTACTTATGTATAATAATAATTTAAAAAATCTTAAAAAAAAAAACATCTCCGTTTCAGGTGTAGATATCTTCATTAGTAATCAGCTTGCAGATGCCCTTGGTGTGCACACAGGTTCTTGAACATGGACAGACCTGTGTTAGACTTGTGGCTATCAGTAGGGGAAGAGTGTATCCTGCAGACCCTGCCCATATTGCCAAGTTGCTTTCTGTTTTACAG
Seq C2 exon
GGCTGGTTCCTCCAGAGACTCCAAGTGTCTGTGCCTCAGACCCATGTGCTCCAGGGACCAAGTGCCAGGCTACAGAAAGTGGTGGCTATACCTGTGAGCCCTCAGAGCTTGGAGGCTGTGCTACTCAGCCATGCCACCACGGGGCACTGTGTGTGCCCCAGGGCCCAGATCCTAACAGCTTCCGTTGCTACTGTGTGCCTGGATTCCAGGGACCCCACTGTGAACTGGACATCGATGAGTGTGCGTCCCGGCCTTGCCAGCATGGGGGCACCTGCCAAAATCTGGCAGATCACTACGAGTGCCACTGTCCCCTGGGATATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035403:ENSMUST00000050372:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000822=EGF=WD(100=31.2),PF0000822=EGF=PU(90.3=25.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types