MmuEX0012667 @ mm10
Exon Skipping
Gene
ENSMUSG00000035403 | Crb2
Description
crumbs family member 2 [Source:MGI Symbol;Acc:MGI:2679260]
Coordinates
chr2:37776249-37786634:+
Coord C1 exon
chr2:37776249-37776446
Coord A exon
chr2:37783200-37783523
Coord C2 exon
chr2:37786439-37786634
Length
324 bp
Sequences
Splice sites
3' ss Seq
AGTTGCTTTCTGTTTTACAGGGC
3' ss Score
9.79
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
AGTGCTGGTTGGAGGGACGCAGGGGCGCGGAGCCCGCCGAGCAGAGGGTTCCCGCAGGCAGGCAGGCAGGCAGGCAGGCAGAGCCGGCTGCCATGGCGCTGGTGGGGCCTAGGATTTGGGGCCCTAGACGAGATATTTACCCCCTGTTGCTGCTACTGCTACTGCTGCTGCTGCTGCTGCTGCCTTGGGTCCCGGCTG
Seq A exon
GGCTGGTTCCTCCAGAGACTCCAAGTGTCTGTGCCTCAGACCCATGTGCTCCAGGGACCAAGTGCCAGGCTACAGAAAGTGGTGGCTATACCTGTGAGCCCTCAGAGCTTGGAGGCTGTGCTACTCAGCCATGCCACCACGGGGCACTGTGTGTGCCCCAGGGCCCAGATCCTAACAGCTTCCGTTGCTACTGTGTGCCTGGATTCCAGGGACCCCACTGTGAACTGGACATCGATGAGTGTGCGTCCCGGCCTTGCCAGCATGGGGGCACCTGCCAAAATCTGGCAGATCACTACGAGTGCCACTGTCCCCTGGGATATGCAG
Seq C2 exon
GCGTGACCTGTGAGGCCGAGGTGGACGAGTGCTCGTCAGCGCCCTGCCTGCACGGAGGCTCGTGCCTGGACGGTGTGGGTTCCTACCGCTGCGTGTGCGCGCCGGGATACGCCGGTGCGAACTGTCAGCTGGACGTGGACGAGTGCCAGAGCCAGCCGTGCGCGCACGGTGGCGTGTGTCACGACCTGGTCAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035403-'2-2,'2-0,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=31.2),PF0000822=EGF=PU(90.3=25.7)
C2:
PF0000822=EGF=PD(6.5=3.0),PF0000822=EGF=WD(100=47.0),PF0000822=EGF=PU(53.1=25.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGAGGGTTCCCGCAG
R:
GTTGACCAGGTCGTGACACAC
Band lengths:
354-678
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types